AMCG00003469


Basic Information

Item Value
gene id AMCG00003469
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4514031 ~ 4522400 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003469
AGAAAATGGTGTGACCACCATGTGCATATGATGCAATGTAGAACATAAACCCAAGGACATTGAGATACTCCATTTATAGACAGCCCAAAAGTGCCTTTCATGCAAGGGaattaaaacatgttctgaAAGTCTCTGCAACGTGAGAGAGAAGTCATTACCTCCTCAGGACTTTAAACCACAGAAACGGACCCAAGTGCTTCCAACCCCAATGGGGCAGCGCAATTCTCAACCACAGCTTTTTCCTGGAGACATCATCGAGTTTCCACGGTCAAAGCATTTTTCTCACTTTGGGATTTattatggagagagagatggagttCCCTACGTGGCACACTTGACATCTCGAGactcagaTTCAAAGATCCTTCTCTTCGGCAGGGCCCTGAAGTCCACAGTGAGAATTGACCCGGTAGACGTCGTAGGGAAGAAATATAAAGTTAGTAACTACTTGGATGACAACCACACACCCCGAGATTTTTACACACTTATCAAACCTGAGATCGACGAGGCCATGGGCAAGATGGTCACGTACGACATCCTCTTCCACAACTGTGAGCACCAAGCCACGCTCTACCGCTACGGGGTCAAGAAATCAGTGCAGCCAGGACAGGAGGAACCAGGACAGGAGGAACCAGGACAGGAGGAACCACGACAGAGGGAGTGA
>TU893
ctgccttattaaaacaaaagaccCCCGAGAGACGAAAGGGAAATCCCCAGCCACCTCTCAATTCAGGCATCAGTGTTCACTTCCTCTTCTACATATTTCAAGTCTCTGCAACGTGAGAGAGAAGTCATTACCTCCTCAGGACTTTAAACCACAGAAACGGACCCAAGTGCTTCCAACCCCAATGGGGCAGCGCAATTCTCAACCACAGCTTTTTCCTGGAGACATCATCGAGTTTCCACGGTCAAAGCATTTTTCTCACTTTGGGATTTattatggagagagagatggagttCCCTACGTGGCACACTTGACATCTCGAGGGCCCTGAAGTCCACAGTGAGAATTGACCCGGTAGACGTCGTAGGGAAGAAATATAAAGTTAGTAACTACTTGGATGACAACCACACACCCCGAGATTTTTACACACTTATCAAACCTGAGATCGACGAGGCCATGGGCAAGATGGTCACGTACGACATCCTCTTCCACAACTGTGAGCACCAAGCCACGCTCTACCGCTACGGGGTCAAGAAATCAGTGCAGattgaaaaaatctacaaaaaaatattgcCCACCTGGCAAGAACtctttgagaagaaaaaactgTAGAAAAGAAATGACAGatgaatgaaaaattattattattaatagaagaAACAGAAGGAGATGCAAGCCTGGTATACATTTCCCTTGTTGTTGAATCTTTAAAATcgaaattgattattttattatgatttttaaaaataatataatattgtaataaagGTTTCTTATAGAGAGTCAATGGAATATTCTACCATTGTACCATAGTAACATTGTAaaggattttatatataatactgtaatattgAGCCTACATAAAATCCCTTTCATTTTTACTTAATGGCAGATTATATGATTGATCCTCTGTCAGAAacctttctgaaaatgtttgttttagacCTACAGACAAAGGTTAGTGCCAATTATACACAAGTGTTGCCATCTGacagtaacaaaaacaattaagggCTAgactaagggccggattaattcaaaaccttgacccacccgctaatagcaaacttcaaacctgtacatcatagctgttacttttatgattagaagaaaaatggcttcttactaaaaatgcagctgaAACCGAGTATAGTTCTTTAGTTTTTGAATAGCAGTTGGGTtaaagttttgctttaatcccagcctaagaCTTAagactttgacctacctgctaATAAAAATGACTAACTGGTACCCttagtttttttcattcatatttttatgaaatatgtttttgtttttaaatgtgtgtgtgtttgtgaattaaTGAAGGATGTGCTGTATACTGTAAGCTATTTTCACTACTATTGAAGTTATGTCCATGATGCTGGAATTCATCTGACTGCCCTCAAATGTTTGTGACAGTTAAGCTTTTGTAATTGTAACTAACAACACTGCATTCAGTAGTTTAGACCACTGCattatacttttataaatgtgtatttgtgaaCCTCTAATTGTCCTGTTATTTCAATTCTAAGTGCATATCGTGTGCTTTTCCTTGTGAAGaaaaatccacaaaataaacaaagattgACAACTTGCAAGGAATGAGAATTTCAGAACTCAATCTCACTTTGCAGcacttaatatatttattttgaattatagaCATTATATTCAATAATTGAAGTTTCTCCATTATCAGAAGAAAAACTAGATACACATTTCTTAACCAGATAAAATGCTTTACTTTtatag

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003469 False 664 mRNA 0.48 5 4514031 4522400
TU893 True 1758 lncRNA 0.52 4 4515348 4520633

Neighbor

gene id symbol gene type direction distance location
AMCG00003474 NA coding upstream 42300 4471337 ~ 4471731 (+)
AMCG00003467 eif2b4 coding upstream 78564 4427711 ~ 4435467 (+)
AMCG00003465 NA coding upstream 147799 4350519 ~ 4366232 (+)
AMCG00003463 NA coding upstream 224083 4280112 ~ 4289948 (+)
AMCG00003457 fndc4,LOC107589087 coding upstream 444969 4065461 ~ 4069062 (+)
AMCG00003468 NA coding downstream 19243 4541643 ~ 4543761 (+)
AMCG00003475 NA coding downstream 167084 4689484 ~ 4695337 (+)
AMCG00003478 LOC108428732,LOC107594120,LOC107734000,LOC107552030,LOC106571024,LOC103363535 coding downstream 652615 5175015 ~ 5187273 (+)
AMCG00003481 NA coding downstream 813091 5335491 ~ 5339847 (+)
AMCG00003485 NA coding downstream 856628 5379028 ~ 5402540 (+)
G742 NA non-coding upstream 29761 4483890 ~ 4484270 (+)
G690 NA non-coding upstream 134212 4326653 ~ 4379819 (+)
G684 NA non-coding upstream 139092 4296559 ~ 4374939 (+)
G646 NA non-coding upstream 423712 4086896 ~ 4090319 (+)
G642 NA non-coding upstream 537992 3975753 ~ 3976039 (+)
G752 NA non-coding downstream 30498 4552898 ~ 4553645 (+)
G907 kbtbd11 non-coding downstream 1028345 5550745 ~ 5556306 (+)
G908 NA non-coding downstream 1035207 5557607 ~ 5558515 (+)
G960 NA non-coding downstream 1307059 5829459 ~ 5829745 (+)
G983 NA non-coding downstream 1433204 5955604 ~ 5955820 (+)
AMCG00003473 NA other upstream 58889 4452564 ~ 4455142 (+)
AMCG00003480 NA other downstream 781050 5303450 ~ 5334752 (+)
G1012 NA other downstream 1965292 6487692 ~ 6494905 (+)
AMCG00003524 rps7,LOC107668222 other downstream 2975640 7498040 ~ 7504015 (+)
AMCG00003534 id2,LOC106566577 other downstream 4126725 8649125 ~ 8652470 (+)
AMCG00003541 asap2,LOC106566627 other downstream 4378056 8900456 ~ 8941751 (+)

Expression


Co-expression Network