AMCG00003476


Basic Information

Item Value
gene id AMCG00003476
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4583142 ~ 4808989 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003476
ATGGAAAATCCTGAGATGTATAGGAGAGAGAGCTCCAGGAGTGGGTCAGGAGTAGGCTGTGACAGGCCCTGGCGCTATGCTGTGGTGATGTCCTTCCTCTACCCCTTCATGGAGGCCTGGCCCACCAGTGGCAACATGCTTACAGGGGTCGAGGAGGACCAGCCAGCCAGCACGAGCCAGAGGCAGATGGAGGGGGATGATGACGCCGCCGAGACCAGGGAGGCTTTTCTTTGCAAGAAAATCATTACCTCTGCTCTGGCCCTGCTGACTGACACTCAGGTTGGGGAGAGCGCGCCCCTGTCCACCCCACACCCAGCCCAGCAGCTGCCTCCTGCTCGAGCACACGCCTGTGCGCTGGACCGGTCGGCCCGTGGGAGCGGGTCATGCAGCTCGGCCAGCCACAGCGCGGTCACTGCGCCCTCCCCGCAGCTGCTCAGGGCTGTGGTGGAGAGACTGGTGCAGGGAAAGGCAGGGTACAGGTTTCAAAACTGGGCCCAGACCTACAGCTCCTGTCCTGAGAAGTACTTCCAGCCCAGCAGTGTGGAGGATGTCAGACAGATTTTAGCAATGGCCAGGCAGAGCAGCAAACGAGTGAAGGTGGTGGGAGGGGGGCACTCTCCCTCTGACATTGCCTGCACGGATGAATTCATGATCAGCTTGGACAAGATGAACAGGGTTCTTGAGGTGAATAAAGAGGAGAGACGAGTCACTGTGGAAGCGGGGATCTTTCTGTGTGATCTGAATGAAGAATTGACCAAACATGGCCTTGCCCTCTCAAATTTGGGCGCTGTGGCGGAGGTGGCGGCCGCTGGGGTAATTGGAACTGGCACCCACAACACGGGCATCGACCATGGCATTCTGCCCACGCAGGTTGTCTCTCTGAGTCTAATGACGGCCGTTGGGGAGGTGCTTCACTGCTCAGACTCGGTGAACCAGGACATCTTCCAGGCTGCCAGGCTCCACCTAGGCTCTCTAGGGGTCATCCTCACCCTAACCTACCAGTGCCAGCCAGCCTTCCGCCTCCACGAGCGCCAGTTCCCCTCCACACTCACAGAGACTGCTATTGCCATGATTACGGCACTGCAAGATCGCTGTGAGGGAATATCAGCAACTTTGAAAACACTTGAAAaagtgatggtgatgatatga
>TU920
TACTAATTCACTTTCTGGAAAGGTATATTGACCAAATTCAGGACAACACATTTGTGCATCTCTTCAGACCAACATATCCAGGAGTCCCTCATTCCTTTGTGACAgggcaaaagaaacaaacagataaaaatGGTGCAGGGAAAGGCAGGGTACAGGTTTCAAAACTGGGCCCAGACCTACAGCTCCTGTCCTGAGAAGTACTTCCAGCCCAGCAGTGTGGAGGATGTCAGACAGATTTTAGCAATGGCCAGGCAGAGCAGCAAACGAGTGAAGGTGGTGGGAGGGGGGCACTCTCCCTCTGACATTGCCTGCACGGATGAATTCATGATCAGCTTGGACAAGATGAACAGGGTTCTTGAGGTAAAAATACCTTTGAAGACTAGTGGATGGATCCAACCAAATTCAATAACTAAATGAGTGTTTTCTCAAGATGAAAGGGTTTACTTGAATCATAATATGATATTATTAAGCCGTCAATTGAGCTGTCTCCACAGACCTTGTCTGGTTGGCTGACTGACTAGTATTAGAATATGATTGATGGCTACTTGGCTGGTTAATCAGCTAATCATACACATGGGGGACACCTCCAGTCTAATATAAAGTCAAAGCCTGGGAGGGTATCttcatttatgtttgtgttttggtttgagTGTTTTTGTTCATCATTATCTCATCTCCCTGGATAAGGTcatcttttaagaaataaataagcataaatAAAATTCAGTGTATGCTCCCCTGGCCTTTGTTCCCATTTGTTAATAGTGTGCTTGTTTGACTTTCTTTGTGTTCCCTAAAGGCCCAGTGTGCC

Function

GO: NA

KEGG:

id description
K00107 ALO; D-arabinono-1,4-lactone oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003476 True 1149 mRNA 0.58 9 4583142 4808989
TU920 False 811 TUCP 0.45 4 4650771 4661367

Neighbor

gene id symbol gene type direction distance location
AMCG00003471 NA coding downstream 17582 4562401 ~ 4565560 (-)
AMCG00003472 NA coding downstream 29908 4547613 ~ 4553234 (-)
AMCG00003470 NA coding downstream 60144 4521548 ~ 4522998 (-)
AMCG00003466 snx17 coding downstream 178500 4376892 ~ 4404642 (-)
AMCG00003462 LOC108435005,LOC103398676,LOC105028620,LOC107697317 coding downstream 259164 4299905 ~ 4323978 (-)
AMCG00003477 NA coding upstream 70831 4879820 ~ 5154595 (-)
AMCG00003479 NA coding upstream 381560 5190549 ~ 5225471 (-)
AMCG00003482 NA coding upstream 548597 5357586 ~ 5358050 (-)
AMCG00003483 NA coding upstream 552098 5361087 ~ 5373418 (-)
AMCG00003486 NA coding upstream 599809 5408798 ~ 5413661 (-)
G762 NA non-coding downstream 35844 4545898 ~ 4547298 (-)
G748 NA non-coding downstream 62125 4520815 ~ 4521017 (-)
G744 NA non-coding downstream 97116 4485607 ~ 4486026 (-)
G743 NA non-coding downstream 97577 4483516 ~ 4485565 (-)
G708 NA non-coding downstream 256292 4282149 ~ 4326850 (-)
G786 NA non-coding upstream 173030 4982019 ~ 4982220 (-)
G804 NA non-coding upstream 322478 5131467 ~ 5131701 (-)
G811 NA non-coding upstream 323711 5132700 ~ 5140245 (-)
G844 NA non-coding upstream 520583 5329572 ~ 5329774 (-)
G845 NA non-coding upstream 521737 5330726 ~ 5334758 (-)
AMCG00003459 NA other downstream 687618 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 1044175 3536172 ~ 3538967 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other downstream 1152870 3394657 ~ 3430272 (-)
AMCG00003422 NA other downstream 2144321 2427397 ~ 2438821 (-)
AMCG00003423 NA other downstream 2181247 2397642 ~ 2401895 (-)
AMCG00003484 NA other upstream 535081 5344070 ~ 5356468 (-)
AMCG00003550 NA other upstream 4200128 9009117 ~ 9082850 (-)
AMCG00003572 NA other upstream 5044210 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 5065681 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 5816357 10625346 ~ 10633112 (-)

Expression


Co-expression Network