AMCG00003479


Basic Information

Item Value
gene id AMCG00003479
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5190549 ~ 5225471 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003479
ACCTGTTGGCATTTCCTCCTGTCCTCAGAGGGTGATGTGATGGTGTTTGCACTGCCGTGACCCAACGCTCGGAGATGTCAGGAGACACCAGCACCCTTTCCTGGAGCCTGGGAAGAGGGGACCCTCCGGGGCTGCCCCAGAGAGCCCCCGACCATCAAACTGTGGGTGATGGAGGAGCCATCAAAATCATCAAGGTCTGCTTCAGCAGTAGCAGCTTCAACCTTGGCAAGAACTTCAAACTGGTGAAGTGTGACAGTTCCTGGGAGATCAGGGACATCATCAACTCTATCCTGAGCAGTGGGAGGCTGGGCCCCAACATCAAGTACCCCGGCTGCTATGGGCTGCTGCTAAAGCATTTGAAATCGGATGAGATTCATTGGCTCCACCCAGACCTGACTGTTGGGGAAATGGAGCAGAGATACGAGCAGCAGCACTTGGAGGCAGAATGGAGATATGATCTGCGGATCCGCTACATCCCACACAATTTTATCGAGAAATTAAAAGAAGACAAGACCACAATGCTCTACTTCTATCAGCAGGTTCGCAGTGACTACATGCATTACTCTGCAAATAAAGTGAGTGATGGCATGGCTTTGCAGCTCGGTTGCTTGGAGATCAGGAGGTTTTATAAGGATATGAACGCAAAGGGACTGGAGAAGAAATCCAACTTTGAATTGCTCGACCCAAACAGCTGAGGAAGATGATCCAGCAGACCTTCCAGCAGTACGCCAGTCTGAAGGAGGAGGAGTGCATTGTGAGGTTCTTCCAAAACTACAGTACCTTCAAGAACTTCGAGGAGGAAGTGTTCCCCTGCGAGCTGGTTCAAGGCTGGAGTATTGCCGTCGACTTGGTCATCGGCTCTAAAGGGATCCGCCAGCGCTCCAGCAAGGAGGCCGTGCCCACCTGTTTAGCCGAGTTCAAGAAGATCAGGAGCATCAAATGTTCCCTACAGGACAACGGCAAAACACTGCTACACCTGGAGATCGAAGGAGCCAAGCAGCCGTTGTCCATCAATGTTGCGTCCCTGGCGATGGCGGAGAATATGACTGACCTGATCGATGGGTACTGTCGGTTAGAGAGCGGGACGAAAAACTCTGTGATTGTGAGGCCAAAGAGTGGCAGCAATCAAAGAAGTTCCCTTCCCGAGATACCAACAGAAGATGGCGGTCACAGTTTTCCTACTTCTGAGAGGGACAGCATGGGGTCGGACATCTATGCAGAGATACCGGAGGAACGGCCCAAGTCTGTGATTAAGTATGGCCTGTCCAGAGATGAAATCATCCTGGGGCGCATCCTGGGGGAGGGCTTCTTCGGGGAGGTGCACGAGGGCGTTTATAAGAATCAGaggAAGGAGAAGATCAGTGTGGCTGTGAAAACGTGCAAAGACTGTTCTCCTGACGTCAAGGAGAAGTTCATGAGTGAAGCTGTGATCATGAAGACCCTGGACCACCCCCACATTGTGAGACTGATCGGGATCATCGAGGAGGACCCGGTGTGGATCGTGATGGAGCTCTATCAGTATGGAGAGCTTGGGAACTACCTGGTGGAAAACAAGAGCACTTTGACAACCGTCCGGCTGATCCTGTTCTCCCTGCAGATCTGCAAAGCGCTGGCATACCTGGAGGGAGTGAACATGGTGCACAGGGACATTGCAGTGAGGAATGTACTGGTGGCTTCTCATGACTCTGTGAAGTTGGGAGATTTTGGCTTGTCCCGATACATTGAGGAAGAGGAATATTACAAAGCCTCTGTCACCAGACTCCCCATCAAATGGATGGCTCCCGAGTCCATCAACTTCAGGCGCTTCACCTCCGCCAGTGACGTGTGGATGTTCGCTGTGTGCATGTGGGAGATCATGAGCTTAGGCCAGCAGCCATTCTTCTGGCTCGAGAACAAAGACGTCATCAACCACCTGGAGCAGGGGATCCGCCTGCCCAAACCCGAggactgcccccccaccctctaCACACTGATGACGCGGTGCTGGACCTACGACCCCCGTGAGAGACCGAAGTTCACAGAGCTGGTCTGCAAGCTCAGTGATATACACAAGATGGAAAAGGAGCAGGAGGTGGAGAAGCAGTTGAGAAACCAATTCCGATCGACGAAGTTCTTTGAACCCATGATCACTATCAATGATCCACCACCGAAGCCTTCGAGGATGAAATCATCTCGCTTTCCCAATACCCTCAACCCTGGCCTAATGAATCAGCTGCCAGAGTCTCTGTGTGCCAGCTCGCCTGCCATTGCTAGCCCCAGTGACTACCAGTCACCCATCGACTCCAACAACAGGCTGCTCCTGCCGCGACCGTTGTCCAGGCGTCGCAGTATGGGGgaaggggagtTAATCAATGAGCCCTTGAGCAAGGAAGACGCCCAGAAGCTGTGGGAGATGGAGAAGACCCGTTTACAGGAAACCCTGAAGAAACAGAAGCAGGAGATGGTGGAGGACAACAAGTGGCTGGAAAAGGAGGAGAAACTACTAGACCCAATGATACAGGAAGACAGTAAAACTCCAGAGGCACTTGAAAAGGAGCCTGGATACGCTGAATTCACAGGTCCCCCAGACAAGCCCCCAAGACTGGCAGCACAGCCTGCCCCCACTGCGGAGCTGGACCGCTCTGAAGACCAGGTGTATCACTTTGTCATGGAGCTGGTGAAGGTGGTGGTCCAGCTGAAGAATGACGTCAACGCCCTCCCGGCCTCCGAGTACGTCAGCGTAGTCAAGTCGGTGGGACTCACTCTGCGCAGCCTGATCCACAGTGTGGACGATGTCTTGCCCACACTGCACTCCTCCAAACGGACAGAGATCGAAGGCACCCAGAAGCTGCTGAACAAGGACATGGCCGAGCTGATTAACAAGATGAAACTGGCCCAGCAGAACGCCGTCACCTCCCTCAAAGAAGAGTGCAAGAGACAGATGCTGACCGCTGCCCACACGCTGGCCATGGACTCCAAGAACCTGCTGGACGCGGTGGACCAGGCCCGGGTCCGCGCCAACATGGCCAAGCCAGTGTCCTCTTAGTCACTGCGGTGAACTGCCAACACACGGAGGGGAACTCGGGGCATCAGGATCACTCCGTCATTCACGTCCTGTATAGAGTGACACGGGGCGAGACCAAGTCAAAACTCTGACCCATCTGTGTGAAGTTTGAGGTCTCTTCTCCTGATCAGTGACACTGCGAGAGGGTACGGGTTTTACTCTGCGGTCCGCGGGTCGGTCACGGTTCTGGTTTGGTCCGGCCCCCAGTCACACCTCATCTGAAGACATCCGTCTTTACAACGCAGGTACGGAAGGGAAGGTGTCGTGCTTTGGCTCCCCAATGAAACcgatattattttatatattaggAAATCTTGCAAGCTGCTTCTCATTTCACTGTATATTTGTCTGGAGTGAGGTCCTCATGTTTTAGGAGTTTTAAGTGccacacatttcatttaattaataaagctgatgatatgataataataataataataataataataataataataataataataataataataataatgatatgccCAAATGGATTTCATAGTTAATGAATTTTCAAAGCTATTTCAACGTTCAGTAGAGGCGTAATGTGAAAACCGTATTCAATGAGGAATACAGGTTgctaaaaatagaaatgaaatgcaaagggttcaattaataaaatataaaaagagatgtacatttttttaaaacacaatacttTGTTAGGGCTGTGCTTCTGCAGatctaaaaaatgttttgtttttttactgtatgttcttaaataaaatatttgaattaaaaagatAACGAGCAACA

Function

GO: NA

KEGG:

id description
K05871 PTK2B, FAK2; focal adhesion kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003479 True 3802 mRNA 0.50 29 5190549 5225471

Neighbor

gene id symbol gene type direction distance location
AMCG00003477 NA coding downstream 35954 4879820 ~ 5154595 (-)
AMCG00003471 NA coding downstream 624989 4562401 ~ 4565560 (-)
AMCG00003472 NA coding downstream 637315 4547613 ~ 4553234 (-)
AMCG00003470 NA coding downstream 667551 4521548 ~ 4522998 (-)
AMCG00003466 snx17 coding downstream 785907 4376892 ~ 4404642 (-)
AMCG00003482 NA coding upstream 132115 5357586 ~ 5358050 (-)
AMCG00003483 NA coding upstream 135616 5361087 ~ 5373418 (-)
AMCG00003486 NA coding upstream 183327 5408798 ~ 5413661 (-)
AMCG00003488 kbtbd11 coding upstream 328010 5553481 ~ 5555742 (-)
AMCG00003489 NA coding upstream 407991 5633462 ~ 5733437 (-)
G811 NA non-coding downstream 50304 5132700 ~ 5140245 (-)
G804 NA non-coding downstream 58848 5131467 ~ 5131701 (-)
G786 NA non-coding downstream 208329 4982019 ~ 4982220 (-)
G777 NA non-coding downstream 407173 4779846 ~ 4783376 (-)
G762 NA non-coding downstream 643251 4545898 ~ 4547298 (-)
G844 NA non-coding upstream 104101 5329572 ~ 5329774 (-)
G845 NA non-coding upstream 105255 5330726 ~ 5334758 (-)
G862 NA non-coding upstream 114990 5340461 ~ 5341987 (-)
G942 NA non-coding upstream 526606 5752077 ~ 5755468 (-)
G946 NA non-coding upstream 562597 5788068 ~ 5788321 (-)
AMCG00003476 NA other downstream 381560 4583142 ~ 4808989 (-)
AMCG00003459 NA other downstream 1295025 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 1651582 3536172 ~ 3538967 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other downstream 1760277 3394657 ~ 3430272 (-)
AMCG00003422 NA other downstream 2751728 2427397 ~ 2438821 (-)
AMCG00003484 NA other upstream 118599 5344070 ~ 5356468 (-)
AMCG00003550 NA other upstream 3783646 9009117 ~ 9082850 (-)
AMCG00003572 NA other upstream 4627728 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 4649199 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 5399875 10625346 ~ 10633112 (-)

Expression


Co-expression Network