AMCG00003487


Basic Information

Item Value
gene id AMCG00003487
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5463759 ~ 5506907 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003487
CTTGGTGAAGATGTCAGCCGCTGAGGAGGATACGGAGCTGCGGGATCTGTTGGTCCAAAATCTGGAAAATAGCGGCGTCTTGAATAAAATCAAGGCAGAACTGCGAGCGGCTGTGTTTCTTGCTCTAGAAGAACAAGAGAAAATAGAGTTAAATGGACTGGAGAGCCGAGAAGCTGTGGCCAGAGAACTGGGCATTACAGAACCAGAGGGCAACAAGAACACCCCACTGCTGCTGGAGATTGTGAAGAGAGGTCGCCACAAAGAGAAGGGCTCCTCCAGCTCAGCAGAGGAATTATCTCCAAAACAGATTGCTGAAGCCAGGAAAAAGTTTGAACATTACGACAAGGGGATCGAAGAGAGCTATTGTGATACaagcatgaaaaacaaaagtaatatcCAGCTGTCATCCCGAGGGTCAAAGCTCAGTGAGAACAGCAAAGAAGCTCCTCTAGTGAAGAGCGTCAGGGATCTGGATGTGGATGTGGATGtggatgaggaagaggaggaagaaggcGATTCCTTCTTTGATGATCCACTGCCCAAACCTCAAAAAACCTATGGCTGCCTCTCTGCTATAAATAGCGACACTGACGACGATGTGGATGATCCCTTTGCAGACAATGGTAATGGATACAACCCAGGCGGGAGCACAAGTCATCgatcagataaaacaaaaagtgaggTCAGCATTGGAGAAGAGATAGAAGAGGTTTCTATTGAAGGAGTGGATTTCAATGCCAGTGATAAGCTTGAGGACCTAACACAGGACCACAGCATTTCCCAGTTCAGTGAAGCGGCTGACTACATGGAGGAAGTGGCATCAGTGTCCCAAAAGTGACTTTATTCTATCATTAGAGAGAGTTTGTTTACGACCACttcatttttgaaagaaaatacaagataATAAAAGACCATGAAAATGCTGGACCTTGAAAACCCTGTCTGTGCCTTCTGACAGAAAATAGTACATGGCTCCTTGATTGATCTCCTATAACAGTCCATATGTTATGGTCTTTCTACATGTATATACGGATGTTGGTGAGCTGGATCAAATTTCCTTTACTATTTTAACTACttagattttagttttctaGTTACAGTGCCAAGATTAATATGGGATGGTTAACTTCACATTATGGCTTGTGTAGTCTAAGACCGAGCATAAGTATCTGACAGGGGGTCTTCGCAGTTCGTCAAATTGTTGTTCATTGTATTGCAGAGTTGTCACTAATGAATATAGGACGTTTTTTTGTCACCTGTCCTCACAGAGTTGGGGGCGGCTTTTGACGTCGGAGCTACAGAGTCACTCTGTGATCTAAGTATCGGCCCAGGAAGGCCAGtagatatttgaaaataatacaagaaaaaacagcagagagCAAGCTCATGCTtaattttatgaataataatttatctAATTTTACTAAGAGTACAGATTACTTTGAATGCCTTGACTTTACGTCATGTGATTTAATGCTTTGGAGATGGGCTAA

Function

GO: NA

KEGG:

id description
K16546 FGFR10P; FGFR1 oncogene partner

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003487 True 1493 mRNA 0.43 8 5463759 5506907

Neighbor

gene id symbol gene type direction distance location
AMCG00003485 NA coding upstream 61219 5379028 ~ 5402540 (+)
AMCG00003481 NA coding upstream 123912 5335491 ~ 5339847 (+)
AMCG00003478 LOC108428732,LOC107594120,LOC107734000,LOC107552030,LOC106571024,LOC103363535 coding upstream 276486 5175015 ~ 5187273 (+)
AMCG00003475 NA coding upstream 768422 4689484 ~ 4695337 (+)
AMCG00003468 NA coding upstream 919998 4541643 ~ 4543761 (+)
AMCG00003495 NA coding downstream 245236 5752143 ~ 5753261 (+)
AMCG00003498 NA coding downstream 260451 5767358 ~ 5769937 (+)
AMCG00003497 NA coding downstream 317674 5824581 ~ 5825732 (+)
AMCG00003496 NA coding downstream 407564 5914471 ~ 5915592 (+)
AMCG00003500 NA coding downstream 759994 6266901 ~ 6267507 (+)
G752 NA non-coding upstream 910114 4552898 ~ 4553645 (+)
G742 NA non-coding upstream 979489 4483890 ~ 4484270 (+)
G690 NA non-coding upstream 1083940 4326653 ~ 4379819 (+)
G684 NA non-coding upstream 1088820 4296559 ~ 4374939 (+)
G646 NA non-coding upstream 1373440 4086896 ~ 4090319 (+)
G907 kbtbd11 non-coding downstream 43838 5550745 ~ 5556306 (+)
G908 NA non-coding downstream 50700 5557607 ~ 5558515 (+)
G960 NA non-coding downstream 322552 5829459 ~ 5829745 (+)
G983 NA non-coding downstream 448697 5955604 ~ 5955820 (+)
G990 NA non-coding downstream 479131 5986038 ~ 5986394 (+)
AMCG00003480 NA other upstream 129007 5303450 ~ 5334752 (+)
AMCG00003469 NA other upstream 941359 4514031 ~ 4522400 (+)
AMCG00003473 NA other upstream 1008617 4452564 ~ 4455142 (+)
G1012 NA other downstream 980785 6487692 ~ 6494905 (+)
AMCG00003524 rps7,LOC107668222 other downstream 1991133 7498040 ~ 7504015 (+)
AMCG00003534 id2,LOC106566577 other downstream 3142218 8649125 ~ 8652470 (+)
AMCG00003541 asap2,LOC106566627 other downstream 3393549 8900456 ~ 8941751 (+)
AMCG00003544 NA other downstream 3568983 9075890 ~ 9106765 (+)

Expression


Co-expression Network