AMCG00003510


Basic Information

Item Value
gene id AMCG00003510
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 7023085 ~ 7035616 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003510
aaccagcagggtagggggtcccccaggaccggtttgggaaccactggtctatGTGATAAGGTACAGTTTCTGGCTCACAAAATGCGAACATGAAATACCTTTATGCTCTATCTTCTAGtaataattttgtaaatgaGGCTCCCTGCTAACACCCAGTTGCCACTGGGCTAAAACAATCCTAGGGGAAAACGACACTGTGTGTAAATGAATGCATAGATAATGATTATAATTGGTATTTTGAACTACACTTcgttttataaaacaaaatacctaaAGGCTCGCCATAAATAGACATTGATAAACTTGTTTACATACACAAGACAAGTAAATCTGCATTCCTTTGAAGTCTGCGCACTTGCTGCGCGCCACTGTGCGAAGGTCGGCTTGCTGTCCACTGCTGCGCCGTGCTTTCAGCCCACGGGCAGAGACCTTCCCTGGGCTCTGAGGAacatacatcaaaacaaatatgaaacaaaactcATGTCGAGAGGACAAAGCGAAAATAATGGACAATATCGAGGAGCCACCTGATGAAACTCGGCACCACAAAAGAGCGACGCAAAGCAGGCAGCGGCCGAACCGCGCAGAAGAGAAGgtgcagcggcagcagcagcgcgACTCGGCCAGCGGACACACGGGCAATGCCAGGCCGGTCCACTTTGCATTGCTCCCCGGTCCGTACGAGCCCCTGGTAGAAGAGGACGATGCGAAAACCACATCTAAGCAGGAAAGGAAAGCGAAGAACAAGAAGAAGTACAAGAAATACAGGAAGAATGTGGGCAAAGCTCTGCGTTTTGGCTGGCGGTGTCTGGTGATTGGGCTTCAAGGCTTCGCAGCTGGCTACACCTCACCTTTGACAGCGGCTACCACTCTGGTCCCAGACCTTCATGGAACAAGGGCTTAGTCTGATTGAGACGATTTCCAGACAGGATTTTGCCTCCCAGGGAACAAACTTTGTTATTCCCACTTGCCTATGTGACCTTCTGATAAGAAGTCACTTGAGACAGAAGGGGTAACTTGCACTGGAGTTCAAATTAAAGCCAATAACAAAGTAGATCTTCACTTTCAGCTTGCATTCAGTATTTAATTGCTTAACTTCAGGGAttagatacattttattatagaaGACCTGCATGTCTTTGCCTATATGGCTCTATTCATAATATCATACATAAAGgtgatatttttaaaggaagtgGAATTTTGTGGAAAAGCAATTTAGGTATAAATGCATGCTagggaaaaaaggaacaaatatGAGAGTGCAATGTATCCcctaattatgtttaatttttttcttaaagtatCTGAAATGTTCCTTTTATTACAGCAGTCTTCATAACATTGTAACATTCCGATTGATAGTTATCTTTTAACATACATTGTaaacaattttgcaaagacaAATCATAAACTATTCCCCTATCGaggcatgcacacacattttatacCACTACCTAGCCATGTTTTGGCTGCAGTTTTTATTGTGATGTTATCGTGATACATGTCTTTGTAAAGGGTACTGTTGGGGTACACTACTAATCAATATAATTTGAGGGAGCAAATATTTTCATTCAACTGAGCTTTTAATGACCTATTGTCCTCAATAATTTCCTCAAATGGACCAATGAACACCCCCTGTACAGGTgttcatgaattaatttaaagagtTCTATAATAATTATGTGAATGTGAAATCCTGTAAAAGTCtgtattcacattttattttcaacaaactGAGTGTTAGACCTGTGCCTTACCAGAAGTGCAAACAAGTGTTCATTGAAAATACCAGGCATTCTGAAAAATGGGACGTGAGAACTGAATAATCAACCTGGGTGTTCCAGAGGTATTCAGCATATCTCAGAATAATACTGAGAAGCACAGAAGGAAAAAGCAAGTGAGAAAAGGCAAAGAGGCTTGTGAATGAAGGTGACAAGTCAGATCATAATGAAGGTGGTGATAATGAGGCAAGATGAAAGCTAGGGGATGGAATGTATTGTGGATTAAAGAAGGAAAGTAAACAGGAAAGACTCAGCAGGgaataaagaaagcaaaaaaaacacgAAACAGTTAAAGAATGGCCTAGCTTTCAGAACATGATACAAAGGCATTTCAGAGACTCCCACTTGCTAACAGcaagactaaaacaaaaacagcgtctgtaatgcaaagtgttataAATCTGTTCCTGCAGCACTTAAAGGAGAAGTTCAGTACATGGGCATTTAGCTGTGCAATAATTAGATTAACGGAGCAGAGATATATGCAGAATGAACATTATCAAGGGGATGTTAATAATTACTAATGATTACTCTGAAGAATTCAGAGGCGCACTCCCCTGAGGCTCTGATAAAAATGAATCATTTCATACAACAACATATTTCATAAACAGGTTAAAGTGATGAGCTGGTCACAATACAGccctggaaaaattaagagaccacttaacattaatttctgaacttggatTGGTCTGACAGAGGCAGCTGGGGGGCCACTCCTTGGGTCTCTGATGGACTGCTTGATATATAATGAGTAAcactattttaaacattagctattattattatgttctaaATTTTATTCACAGATACATGATCAGTATTAATGAacataattagattttttattctgttcattCAAATCTGaattgcacattattattatattattattgtgttctttttaaaaattgattgaaatGTAGCTGATGAGTTCTTGTgtaaaattattgttatttatcatACAAGACAGTATTTTATGGAttccaataaaataatttatactgCTCTGTGACTGCTTTCTCTGgtgtgtataaatgtacaaGTATGTTGCTGTGAATGTTCCATTACATTAATAAAGGGTTTCAGTgggtacattaaaaaaaaaatgataatgatcATTGATAATTGTTCCCCAAGGATTTCCGGACAAGACTCCCAGGGAACAAACTGCATTATTCCTACTTGCCTACATGACCTTCTGACAAGAAGTCACTAGAGACAGAAGGGGTAACTTGCATTGGAGTTCAAATAACAAAGTAAATCACTTTCAGCAtgcattcagtattttattgctTAACTTCAGGGATTAGAGAAActttattaaagaaattaagacCTGCATGTCTTTCCCTATATGACtctatatattttcttgctaaactatttcttaattattcccttattaaaatatgcatgatcaatatttattgatttattgaattcCTGCTTGACCTGACAGACAATACAATGTCTCTACTctgagcattttaaattatatgattTGTTTGCAGATATGTAATGGTTTCCACACTCTGTAGTATTTTCAAACATTATCAAacagtacattattttcaaaatcaggtaattaaacagaaatgaatgCAATCGTACTCATTCAACAGCAGTTTCTTTATATTAACTTGCATGTACTGTGAAAATGCATCtcaaagtttttagttttttttttcactttaaaaagtgTCAGACATTGCAATTTGG

Function

GO: NA

KEGG:

id description
ko02010 ABC transporters
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003510 True 3506 mRNA 0.38 2 7023085 7035616

Neighbor

gene id symbol gene type direction distance location
AMCG00003511 NA coding downstream 500 7016952 ~ 7022585 (-)
AMCG00003512 NA coding downstream 91979 6930769 ~ 6931106 (-)
AMCG00003509 NA coding downstream 152010 6827926 ~ 6871075 (-)
AMCG00003508 sh3yl1,LOC107674108,LOC107733179,LOC107594817 coding downstream 218195 6803200 ~ 6804890 (-)
AMCG00003503 NA coding downstream 295483 6704816 ~ 6727602 (-)
AMCG00003514 NA coding upstream 18177 7053793 ~ 7057307 (-)
AMCG00003515 pxdn coding upstream 51024 7086640 ~ 7135114 (-)
AMCG00003517 NA coding upstream 132211 7167827 ~ 7208968 (-)
AMCG00003518 NA coding upstream 185872 7221488 ~ 7227518 (-)
AMCG00003520 tssc1 coding upstream 345482 7381098 ~ 7407614 (-)
G1117 NA non-coding downstream 171326 6841769 ~ 6851759 (-)
G1114 NA non-coding downstream 197369 6818657 ~ 6825716 (-)
G998 NA non-coding downstream 735545 6287328 ~ 6287540 (-)
G993 NA non-coding downstream 1036110 5986565 ~ 5986975 (-)
G982 NA non-coding downstream 1067766 5955104 ~ 5955319 (-)
G1147 NA non-coding upstream 37785 7073401 ~ 7073614 (-)
G1196 NA non-coding upstream 329351 7364967 ~ 7365277 (-)
G1238 NA non-coding upstream 455665 7491281 ~ 7491480 (-)
G1228 NA non-coding upstream 463817 7499433 ~ 7504188 (-)
G1252 NA non-coding upstream 753057 7788673 ~ 7788914 (-)
AMCG00003484 NA other downstream 1666617 5344070 ~ 5356468 (-)
AMCG00003476 NA other downstream 2214096 4583142 ~ 4808989 (-)
AMCG00003459 NA other downstream 3127561 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 3484118 3536172 ~ 3538967 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other downstream 3592813 3394657 ~ 3430272 (-)
AMCG00003550 NA other upstream 1973501 9009117 ~ 9082850 (-)
AMCG00003572 NA other upstream 2817583 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 2839054 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 3589730 10625346 ~ 10633112 (-)
AMCG00003586 NA other upstream 3915468 10951084 ~ 10956353 (-)

Expression


Co-expression Network