AMCG00003520 (tssc1)


Basic Information

Item Value
gene id AMCG00003520
gene name tssc1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 7381098 ~ 7407614 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003520
AACCATTCATTGTGTATAAATTACGAAGAAAGCGTTGTATAACTTAAGTAATGTTTTCAGTCGGTTTCTTTTTTATCCCTTTCGCGGAAATGTTAGCAGTTGGAATGGATGATGTTTAGGCACCGAATCAATGATACGCTAAATAAACGATAGGTTATTGAATTAACTCGTTAAAATATGGAGGACGACGCACCTGTCATATATGGCCTTGAATTTCAGGCCCGAGCTTTAACAGCCCAGACAGCAGAGACAGATGCTATACGCTTTCTTGTTGGCACACAATCTCTAAAATTTGACAATCAGataCACATCATTGACTTTGATgatgaaaataacattattaataagaaCGTTCTCCTCCACCAAATTGGAGAAATATGGCATATGAGCACTAGTCCTGCAGATAAAAGCGTGTTGACAACATGTTACAACAAAACTTCAGACAGTAAAGTGGTAACATGTGCAGCTGTGTGGAGGATGCCGAAGGAATTGGAATCAGGCAGTCATGAATCCCCTGATGATTCAGCAAGCAACCCACAGACCCTGGAGCTCCTCTGTCACCTTGACAACACAGCCCACGGCAATATGGCCTGtgttCTCTGGGAACCCATGGGTGATGGCAAAAGGTTGATTTCACTGGCAGATAATCATCTCCTGCTGTGCGACTTACAGGAAAGTGGCACCAAGGCTGTGATATCAAGCTCTACTACACTGGAGGGTAAAGGCCAGCTGAAGTTTACTTCTGGAAAATGGAGCCCACATCACAACTGCACACAAGTTGCTACTGCCAACGATACAGCCATCCGAGGCTGGGACATTAGGAGCATGAGTCAGATGTATTGCATAGAAAACGCTCATGGCCAACTGGTGAGAGACTTGGACTTCAATCCAAATAAGCAGTACTATTTGGCCAGCTGCGGAGATGACTGCAAGGTCAAGTTCTGGGACGTCAGGAACATCAGTGAGCCTGTCAAGAGCCTGGAAGAGCACTCCCACTGGGTGTGGAGTGTGAGGTACAATCACTCGCATGATCAGCTGGTCCTGACTGGCAGTAGCGACAGCAGAGTCATTCTCTCCAACATGGTGTCCATCTCTTCCGAGCCCTTTGGCCACTTGGTGGATGAAGATGATTTGAGCGACCCAGAGGAAAATCATCAGGAGGAGAAGTATTGCACCTTTTTCACTATTGTTTTACTTCATACATTTAAGCAACAGTGA

Function

symbol description
tssc1 EARP and GARP complex-interacting protein 1

NR:

description
protein TSSC1 isoform X1

GO: NA

KEGG:

id description
K23289 EIPR1, TSSC1; EARP and GARP complex-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003520 True 1218 mRNA 0.45 8 7381098 7407614

Neighbor

gene id symbol gene type direction distance location
AMCG00003518 NA coding downstream 153580 7221488 ~ 7227518 (-)
AMCG00003517 NA coding downstream 172130 7167827 ~ 7208968 (-)
AMCG00003515 pxdn coding downstream 245984 7086640 ~ 7135114 (-)
AMCG00003514 NA coding downstream 323791 7053793 ~ 7057307 (-)
AMCG00003510 NA coding downstream 345482 7023085 ~ 7035616 (-)
AMCG00003519 adi1,LOC102789913 coding upstream 13442 7421056 ~ 7446873 (-)
AMCG00003528 NA coding upstream 82083 7489697 ~ 7498092 (-)
AMCG00003531 NA coding upstream 871282 8278896 ~ 8283744 (-)
AMCG00003536 NA coding upstream 1246144 8653758 ~ 8672876 (-)
AMCG00003538 LOC106571256,LOC107668217,LOC107693235,LOC107549106 coding upstream 1278432 8686046 ~ 8706309 (-)
G1196 NA non-coding downstream 15821 7364967 ~ 7365277 (-)
G1147 NA non-coding downstream 307484 7073401 ~ 7073614 (-)
G1117 NA non-coding downstream 529339 6841769 ~ 6851759 (-)
G1114 NA non-coding downstream 555382 6818657 ~ 6825716 (-)
G998 NA non-coding downstream 1093558 6287328 ~ 6287540 (-)
G1238 NA non-coding upstream 83667 7491281 ~ 7491480 (-)
G1228 NA non-coding upstream 91819 7499433 ~ 7504188 (-)
G1252 NA non-coding upstream 381059 7788673 ~ 7788914 (-)
G1254 NA non-coding upstream 388836 7796450 ~ 7796858 (-)
G1268 sox11,LOC106958914,LOC103147284 non-coding upstream 569166 7976780 ~ 8054337 (-)
AMCG00003484 NA other downstream 2024630 5344070 ~ 5356468 (-)
AMCG00003476 NA other downstream 2572109 4583142 ~ 4808989 (-)
AMCG00003459 NA other downstream 3485574 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 3842131 3536172 ~ 3538967 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other downstream 3950826 3394657 ~ 3430272 (-)
AMCG00003550 NA other upstream 1601503 9009117 ~ 9082850 (-)
AMCG00003572 NA other upstream 2445585 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 2467056 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 3217732 10625346 ~ 10633112 (-)
AMCG00003586 NA other upstream 3543470 10951084 ~ 10956353 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location