AMCG00003521


Basic Information

Item Value
gene id AMCG00003521
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 7505463 ~ 7514410 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003521
GAAAACTTAATCCCCCGGACAAAGGAATAGTTGTCAGGTTTCTGTAAACACAGCTATGAAGTTCATTTGTGTATTGCTTCAGGATCCAAAGGGTACTCCTTGCTGTTGTGTTGTACTAAAGCATTCTGACGGAGTCAGTGGCCTCTAAGCCTTCATGATGAGAGGAGATCTGCTGTTACTTGACGGCCTCATTAGCGTGCTGTGTCTTGCTCTGCTGAGCTCTGCTCATTCTCAACACATCGCCGACGAGCCCTGCTCCGTGCAGATCCTCGTGCCAGGCCTCAAAGGAGACGCAGGAGAAAAGGGGGAGAAGGGAGCGCCAGGGAGGCCGGGAAGAGCAGGACCTCCTGGAGATATTGGAAATCCTGGGCTTAAGGGACAGAAAGGTCTAATGGGACGTCATGGGAAAGTGGGCCCCATTGGTTTGAAAGGTGATAAAGGAGATATGGGACATGCTGGACCACAAGGACCTAATGGAGACCCAGGCCTACCCTGTGAATGTGCTCCACTCAGGAAGATGATTGGTGAAATGGATATCCTTGTTTCCCATTtaacaaatgaattaaaattcataaaaaatGCTGTTGCTGGCGTGAAGGAGATGGACAGCAAAATCTACCTGTTGGTCAAGGAGGAGAAGCGCTACTTGGATGCAGAGGTCTACTGCCAAGGGAGAGGAGGACACTTGGCCATGCCCAAGGATGAGGCTGCCAATGGGGTCATTGCCTCCTACATCAGCCAGGCTGGCCTCAACAGGGTGTTTATTGGCATTAATGACCTGGATAGGGAGGGCCACTTTGCCTATGTGGATAGATCCCCCATGACCACCTTCAACAAATGGCGAGGAGGGGAGCCCAACAACGCATATGAAGAAGAGGATTGTGCTGAGATGGTGGCCTCAGGTGGCTGGAATGACGTGGCCTGCCACATCACAATGTATTTCGTTTGTGAATTTGACAAGGACAGCGTATAGACAGAGTAAGGGGTGATTGCCCTCATTTAGAGGACTTCTGCTACCATTCTTTCTGACTCGGACCAGAGGACAGTTTGGGCCACTATATTGCGAAGGACActaaaacaagagaaaaaagtGCATTCTTATTGGAACTCCATGTGTTTCCGATTTATCATTAGAGAATCTGTGTATCACTGATAAACactcattattatattatattttgtgacataattaaaatcatttgaGTACtttattaaaaggaaacatGATTTGAGAGGtaatttttagtttagttttgtgttttattgaaagAGACCAAATGACATTCACTCTCAGAATAATTATGGGTCTATAGTTATGTCTTGCTGCAAATATTCACTCATTGGTGCAGATGTGCAGAGGTTTACACTTCAATATGTGCACtagtgcattaaacactttcACGAGCAACAGCACACTGCAGTTTGTATTAAGGAAGAAGTATGTTATAATCCCAGATTTAGTTCATTTTCTTACATGTACATGATAATGTGAACCgaatttaacttatttatatgCTATTGCAATCAATGGCATAGATTTAGCTAGGCACGTAGAGACATGTCCCTACCAATGTCAAGGGAACGTTGAATTGTCCCTACCAataattgtgatattttttgtattattattttattactttttatgtataagtttatttaaacagtGGGGGCGGGGGCcgatattaaaatgcatgccAGTGGGGCGTGTGTCCTTGGGGGCTCGCTATTGTATTGTTTCACAGCTGCgtcatgatgtgtgtgtgtgtgtgtacgtgcgAGCATGTTTTGTATGGAGGGGAATCCG

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0005581 collagen trimer cellular_component
GO:0005537 mannose binding molecular_function

KEGG:

id description
K10066 COLEC11; collectin sub-family member 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003521 True 1804 mRNA 0.44 7 7505463 7514410

Neighbor

gene id symbol gene type direction distance location
AMCG00003527 NA coding upstream 23257 7466921 ~ 7482206 (+)
AMCG00003529 NA coding upstream 45987 7453411 ~ 7459476 (+)
AMCG00003522 trappc12 coding upstream 67016 7422803 ~ 7438447 (+)
AMCG00003523 NA coding upstream 95334 7408545 ~ 7410129 (+)
AMCG00003516 NA coding upstream 458060 7045216 ~ 7047403 (+)
AMCG00003525 NA coding downstream 3641 7518051 ~ 7531125 (+)
AMCG00003526 NA coding downstream 18143 7532553 ~ 7547554 (+)
AMCG00003530 LOC108258189,LOC103368564,LOC106533618 coding downstream 464365 7978775 ~ 7980197 (+)
AMCG00003532 rsad2 coding downstream 770417 8284827 ~ 8292218 (+)
AMCG00003533 rnf144a,rnf144aa,LOC107752753,LOC106610698 coding downstream 802628 8317038 ~ 8337650 (+)
G1218 NA non-coding upstream 15582 7489445 ~ 7489881 (+)
G1187 NA non-coding upstream 139986 7364944 ~ 7365477 (+)
G1146 NA non-coding upstream 431854 7073404 ~ 7073609 (+)
G990 NA non-coding upstream 1519069 5986038 ~ 5986394 (+)
G983 NA non-coding upstream 1549643 5955604 ~ 5955820 (+)
G1241 NA non-coding downstream 9451 7523861 ~ 7750465 (+)
G1242 NA non-coding downstream 12449 7526859 ~ 7528458 (+)
G1253 NA non-coding downstream 282041 7796451 ~ 7796854 (+)
G1271 NA non-coding downstream 761352 8275762 ~ 8276983 (+)
G1291 NA non-coding downstream 825856 8340266 ~ 8340592 (+)
AMCG00003524 rps7,LOC107668222 other upstream 1448 7498040 ~ 7504015 (+)
G1012 NA other upstream 1010558 6487692 ~ 6494905 (+)
AMCG00003480 NA other upstream 2170711 5303450 ~ 5334752 (+)
AMCG00003469 NA other upstream 2983063 4514031 ~ 4522400 (+)
AMCG00003473 NA other upstream 3050321 4452564 ~ 4455142 (+)
AMCG00003534 id2,LOC106566577 other downstream 1134715 8649125 ~ 8652470 (+)
AMCG00003541 asap2,LOC106566627 other downstream 1386046 8900456 ~ 8941751 (+)
AMCG00003544 NA other downstream 1561480 9075890 ~ 9106765 (+)
AMCG00003551 NA other downstream 1741418 9255828 ~ 9263468 (+)
AMCG00003570 NA other downstream 2263098 9777508 ~ 9781756 (+)

Expression


Co-expression Network