AMCG00003528


Basic Information

Item Value
gene id AMCG00003528
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 7489697 ~ 7498092 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003528
ATGCGGCTCCATCTGCTGAACACGTGTCCGGTGTCTCCTGTCCTGCTGTCCTCCCACCGGCAGGAGGCGCCTCTCCGCGCAGCCGCTGCTTCACACATTAAAGCGTGCGATGGCGAGGGGCGGCGCTGTGACCCGGAGGAGCGTCTGAGTTCACAGGAAGTCGTGATTGcagtcactgtcactAAGTTTGCATCAGAGGAGGAGGCTTTGGCCTTTGTCAGCAGCAAAACCGAAGAGGTAGCTACAGCCTCAGTAACAGcatGCACTAGCGGTGTAGCAGCAGACACCAGCACTGCAGTCGGAACGGCCTTAGCGAAGACCAGTGCCATTAAGAGGCTGTGCGAGGAAGAAGAGACTGCTTCTTCAAAACGCTTCAAACATGCAGAGGAGGAATTACAGCGTGCTTATCCAGCCACAGATGTCAAAGAAGGTCTAACATACATGGGTGATGCTGTGGTGGTCTATACTGATGGCTGCTGTTCGAACAATGGACAGTCAGGAGCTCGGGCTGGGATTGGCGTTTACTGGGGACCGCAGCATCCAATGAATGTAGGTGACCGTTTGCATGGGAGGCAGACAAACCAGAGAGCAGAAATATGGGCAAGTAATATCTCCAatgattatttgtttGCTGCCTGTAAAGCCCTGGAACAGGCCAAAGACATGAAAATCCAGAAAATTGTGATCTACACAGACAGCATGTTTACAATTAATGGCATTACAAAGTGGGTGAAGAACTGGAAGGCTAAGGGATGGAAGCTTAAATCCGGTGGCCAAGTTGTTAACAAGGAGGATTTTCAAAAGCTAGAAACAATGATCGAAGGCATGGAGATAGTGTGGGAGGAAGACCTGTTCAGTGTAGGTGGATCAATCACCAAAGTGAAGCTCCTGAATGCCAGGCTTGACAGTGGACCTGGAGACAGAGGAGGACGTCCCTGTCGATGTAAAGATGAGGATGATCTGAACAGTTGCCTGAAGACTGAGCTGGACAGTCCTCCTGCAGAGCATCAGCGTCTGCTCCGGCACCTAGTCCACTTCCGGCTCCGAGTGGCGTCTCACAGCGAGACCAATAAGATGTCAGTGCAGAACTTGGGGACCGTGTTTGGACCCTGCATATACCAGTGA

Function

GO: NA

KEGG:

id description
K03469 rnhA, RNASEH1; ribonuclease HI

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003528 True 1125 mRNA 0.52 9 7489697 7498092

Neighbor

gene id symbol gene type direction distance location
AMCG00003519 adi1,LOC102789913 coding downstream 42824 7421056 ~ 7446873 (-)
AMCG00003520 tssc1 coding downstream 82083 7381098 ~ 7407614 (-)
AMCG00003518 NA coding downstream 262179 7221488 ~ 7227518 (-)
AMCG00003517 NA coding downstream 280729 7167827 ~ 7208968 (-)
AMCG00003515 pxdn coding downstream 354583 7086640 ~ 7135114 (-)
AMCG00003531 NA coding upstream 780804 8278896 ~ 8283744 (-)
AMCG00003536 NA coding upstream 1155666 8653758 ~ 8672876 (-)
AMCG00003538 LOC106571256,LOC107668217,LOC107693235,LOC107549106 coding upstream 1187954 8686046 ~ 8706309 (-)
AMCG00003537 NA coding upstream 1223152 8721244 ~ 8751203 (-)
AMCG00003549 NA coding upstream 1489013 8987105 ~ 9005791 (-)
G1196 NA non-coding downstream 124420 7364967 ~ 7365277 (-)
G1147 NA non-coding downstream 416083 7073401 ~ 7073614 (-)
G1117 NA non-coding downstream 637938 6841769 ~ 6851759 (-)
G1114 NA non-coding downstream 663981 6818657 ~ 6825716 (-)
G998 NA non-coding downstream 1202157 6287328 ~ 6287540 (-)
G1228 NA non-coding upstream 1341 7499433 ~ 7504188 (-)
G1252 NA non-coding upstream 290581 7788673 ~ 7788914 (-)
G1254 NA non-coding upstream 298358 7796450 ~ 7796858 (-)
G1268 sox11,LOC106958914,LOC103147284 non-coding upstream 478688 7976780 ~ 8054337 (-)
G1281 LOC107655310,LOC107707684,LOC107553276 non-coding upstream 790743 8288835 ~ 8289762 (-)
AMCG00003484 NA other downstream 2133229 5344070 ~ 5356468 (-)
AMCG00003476 NA other downstream 2680708 4583142 ~ 4808989 (-)
AMCG00003459 NA other downstream 3594173 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 3950730 3536172 ~ 3538967 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other downstream 4059425 3394657 ~ 3430272 (-)
AMCG00003550 NA other upstream 1511025 9009117 ~ 9082850 (-)
AMCG00003572 NA other upstream 2355107 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 2376578 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 3127254 10625346 ~ 10633112 (-)
AMCG00003586 NA other upstream 3452992 10951084 ~ 10956353 (-)

Expression


Co-expression Network