AMCG00003530 (LOC108258189,LOC103368564,LOC106533618)


Basic Information

Item Value
gene id AMCG00003530
gene name LOC108258189,LOC103368564,LOC106533618
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 7978775 ~ 7980197 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003530
ATGGTGCAGCAGACAGAAGCCAGCGAGACGGAGAGCAGCGTGTCCAGAGAGGCGACCGACACCGAGGAGAACGACTGCATGGCTTGCAGTCCCGTCCCGCTGAACCCGGACTGGTGCAAGACGGCGACGGGGCACATCAAGCGGCCGATGAACGCCTTCATGGTGTGGTCCAAGATCGAGAGGAGAAAGATCATGGAGCAGTCGCCGGACATGCACAACGCCGAGATCTCCAAAAGACTGGGCAAGCGCTGGAAAATGCTTAAGGACGGCGAAAAGATCCCCTTCATCAGGGAAGCCGAGAGACTCCGGCTCAAACACATGGCCGACTACCCCGACTACAAATACCGACCCAAGAAGAAACCAAAGCTCGACTCTGCCTCCAAGCCCAGCGCGCCGTCGCCGGAGAAGCACGGCGTGAAAGTGAGCAAGACCCCCGGGAAGAAGTGTCCCAAACTCAAGTCCGGCAAGACGGGGAGCAAGTCCTCCCCGGAGTACGGCGACGACTACGCGTTTCCCAGCCTGAAAGCGACTAAGCCCACCAGAAGCGTGCTCACCGACGAGGACGACGACGAGGACTACGAGGACGACCTGCAGATGCGGCTCAAGCAGGAGGACGAGGAGCAGCAGCTGAGGCCGTACGGGGTGGCCAAGGTGCCGGCCAGCCCGACCCTGAGCTCCTCGGCGGAGTCCGAAGGCGCCAGCATGTACGAGGAGGTCCGAActgcggcggcggcggcggcggcaccGAACAGCAGACtgttttacaatttcaaaaacatcACCAAGCAGAGCACCAGCTACCCGGCGTCCGTCTCGCCGGCCTCGTCCCGCTCGGTGTCCACGTCGTCCAGCTCCAGCGAGGACGCGGACGACTTGCTCTTTGACTTCAGCTTAAATTTCGCCCCCAACGCGGCCGGCTCGGACCTGGGCCACCCCAGTTCAGGAAACCTGTCCCTCTCCCTGgtcTACAATTAA

Function

NR:

description
PREDICTED: transcription factor SOX-11-like

GO: NA

KEGG:

id description
K09268 SOX11_12; transcription factor SOX11/12 (SOX group C)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003530 True 975 mRNA 0.62 2 7978775 7980197

Neighbor

gene id symbol gene type direction distance location
AMCG00003526 NA coding upstream 431221 7532553 ~ 7547554 (+)
AMCG00003525 NA coding upstream 447650 7518051 ~ 7531125 (+)
AMCG00003521 NA coding upstream 464365 7505463 ~ 7514410 (+)
AMCG00003527 NA coding upstream 496569 7466921 ~ 7482206 (+)
AMCG00003529 NA coding upstream 519299 7453411 ~ 7459476 (+)
AMCG00003532 rsad2 coding downstream 304630 8284827 ~ 8292218 (+)
AMCG00003533 rnf144a,rnf144aa,LOC107752753,LOC106610698 coding downstream 336841 8317038 ~ 8337650 (+)
AMCG00003535 NA coding downstream 839215 8819412 ~ 8842419 (+)
AMCG00003542 itgb1bp1 coding downstream 977944 8958141 ~ 8959534 (+)
AMCG00003539 cpsf3 coding downstream 985514 8965711 ~ 8977843 (+)
G1253 NA non-coding upstream 181921 7796451 ~ 7796854 (+)
G1241 NA non-coding upstream 228310 7523861 ~ 7750465 (+)
G1242 NA non-coding upstream 450317 7526859 ~ 7528458 (+)
G1218 NA non-coding upstream 488894 7489445 ~ 7489881 (+)
G1187 NA non-coding upstream 613298 7364944 ~ 7365477 (+)
G1271 NA non-coding downstream 295565 8275762 ~ 8276983 (+)
G1291 NA non-coding downstream 360069 8340266 ~ 8340592 (+)
G1303 NA non-coding downstream 463543 8443740 ~ 8444024 (+)
G1343 NA non-coding downstream 680835 8661032 ~ 8666927 (+)
G1347 NA non-coding downstream 719269 8699466 ~ 8700554 (+)
AMCG00003524 rps7,LOC107668222 other upstream 474760 7498040 ~ 7504015 (+)
G1012 NA other upstream 1483870 6487692 ~ 6494905 (+)
AMCG00003480 NA other upstream 2644023 5303450 ~ 5334752 (+)
AMCG00003469 NA other upstream 3456375 4514031 ~ 4522400 (+)
AMCG00003473 NA other upstream 3523633 4452564 ~ 4455142 (+)
AMCG00003534 id2,LOC106566577 other downstream 668928 8649125 ~ 8652470 (+)
AMCG00003541 asap2,LOC106566627 other downstream 920259 8900456 ~ 8941751 (+)
AMCG00003544 NA other downstream 1095693 9075890 ~ 9106765 (+)
AMCG00003551 NA other downstream 1275631 9255828 ~ 9263468 (+)
AMCG00003570 NA other downstream 1797311 9777508 ~ 9781756 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012247 sox11a coding NC_007128.7 CM002901.2 35878544 ~ 35881841 (-)
rainbow trout (Oncorhynchus mykiss) G675834 LOC106571238 unknown NC_048572.1 CM023226.2 13983626 ~ 13986108 (-)