AMCG00003532 (rsad2)


Basic Information

Item Value
gene id AMCG00003532
gene name rsad2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8284827 ~ 8292218 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003532
ATGACATCGGCCCGTGCCAGGCAAACACCAGATACAAggactgcagcagcagcagagggagGAAACATGTTTGCCACTGACATCTTTCTCATCCTGCACCTGTGCGTGAGCAATGCGTGCTGCGTGTTGTGCAGCGTGGGCAGCGCCTGCTGGAGCTGGGTCGGGCTGAGCATCGAGGAGGGAGACCCGGCCAGAGTCTCCTGCAAGCCCGCAGGGAGGAGCAGCCGTCCAGGCGCCAGAGACCAGAGGCAAGAAGCCCCAGATGCACCGGTCCCCACCAGTGTCAACTACCATTTCACACGGCAGTGCAATTACAAATGCGGGTTTTGTTTCCACACTGCAAAAACCTCCTTTGTCCTGCCTATAGAAGAAGCCCAGCGGGGGCTGCGGCTGCTTAAGCGAATGGAAAAAATCAACTTTTCTGGAGGGGAGCCCTTCTTACACGAGCGTGGTGACTTTTTGGGAAAACTGGTTCAATTCTGCAAACAAGATTTGGAGTTGCAAAGTGATTATCTAGACATTTTAGCGGTTTCCTGTGATAGTTTCAATGAGGAGACCAACAGCATGATAGGCCGACGACAGGGGAAGAAAAGCCACTTGGAAAACCTATACAAAGTACAGAACTGGTGCAGAGAGTACAAAGTGGCTTTCAAAATCAATTCGGTCATCAATACTTTCAACGTGGACGAGGATATGGGGGACCGCATCAGAGAGCTCAGTCCAGTGCGCTGGAAGGTATTTCAGTGCCTGGTTATTGATGGGGAGAATGCAGGTGAAGACGCCCTGAGAGAAGCAGAAAGATTTGTCATCACTGACCAGGAATTTCAGAGCTTCCTGGAGCGACACCGTGACGTGAAGTGCTTGGTGCCCGAATCAAATGAAAAGATGAGAGATTCGTACCTCATTCTGGATGAATATatgCGTTTTCTGGATTGCAGAGAGGGCAGAAAAGACCCATCTAAATCCATCCTTGATGTAGGTGTTGAGAATGCCATTACATTCAGTGGCTTTGATGAGAAGATGTTTTTAAAGAGAGGTGGAAAGTACATTTGGAGTAAAGCAGATATGCAACTAGAGTGGTGATTAAAGCACCAACTACTTTGGCCTGCCTCCGGTGCACTAGAACACATTTAAGTTGATGCAGAAAATTGATGGGTATTATTTTGATTGGCATAGCCaatcagtaaaaacaaagttgggaaattgttttgttgttgttgttgttttttttaaattaatgtaaataggCAAGAATGGGCTCTGATATAGGAATTGCCTGATAtggattaaattatattaatctaatttatgactttacaaaaaaaaagaaacatttgtattattttcatataaagtatatgttatatatgttgttttgtcATACATGTTGTAAAATCCTGTTGTtgatacattataaataat

Function

symbol description
rsad2 Predicted to enable 4 iron, 4 sulfur cluster binding activity. Acts upstream of or within response to virus. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum and mitochondrion. Human ortholog(s) of this gene implicated in respiratory syncytial virus infectious disease. Orthologous to human RSAD2 (radical S-adenosyl methionine domain containing 2).

NR:

description
PREDICTED: radical S-adenosyl methionine domain-containing protein 2 isoform X2

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0051607 defense response to virus biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005811 lipid droplet cellular_component
GO:0046872 metal ion binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K15045 RSAD2; radical S-adenosyl methionine domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003532 True 1422 mRNA 0.45 6 8284827 8292218

Neighbor

gene id symbol gene type direction distance location
AMCG00003530 LOC108258189,LOC103368564,LOC106533618 coding upstream 304630 7978775 ~ 7980197 (+)
AMCG00003526 NA coding upstream 737273 7532553 ~ 7547554 (+)
AMCG00003525 NA coding upstream 753702 7518051 ~ 7531125 (+)
AMCG00003521 NA coding upstream 770417 7505463 ~ 7514410 (+)
AMCG00003527 NA coding upstream 802621 7466921 ~ 7482206 (+)
AMCG00003533 rnf144a,rnf144aa,LOC107752753,LOC106610698 coding downstream 24820 8317038 ~ 8337650 (+)
AMCG00003535 NA coding downstream 527194 8819412 ~ 8842419 (+)
AMCG00003542 itgb1bp1 coding downstream 665923 8958141 ~ 8959534 (+)
AMCG00003539 cpsf3 coding downstream 673493 8965711 ~ 8977843 (+)
AMCG00003540 NA coding downstream 687382 8979600 ~ 8982021 (+)
G1271 NA non-coding upstream 7844 8275762 ~ 8276983 (+)
G1253 NA non-coding upstream 487973 7796451 ~ 7796854 (+)
G1241 NA non-coding upstream 534362 7523861 ~ 7750465 (+)
G1242 NA non-coding upstream 756369 7526859 ~ 7528458 (+)
G1218 NA non-coding upstream 794946 7489445 ~ 7489881 (+)
G1291 NA non-coding downstream 48048 8340266 ~ 8340592 (+)
G1303 NA non-coding downstream 151522 8443740 ~ 8444024 (+)
G1343 NA non-coding downstream 368814 8661032 ~ 8666927 (+)
G1347 NA non-coding downstream 407248 8699466 ~ 8700554 (+)
G1375 NA non-coding downstream 551609 8843827 ~ 8844082 (+)
AMCG00003524 rps7,LOC107668222 other upstream 780812 7498040 ~ 7504015 (+)
G1012 NA other upstream 1789922 6487692 ~ 6494905 (+)
AMCG00003480 NA other upstream 2950075 5303450 ~ 5334752 (+)
AMCG00003469 NA other upstream 3762427 4514031 ~ 4522400 (+)
AMCG00003473 NA other upstream 3829685 4452564 ~ 4455142 (+)
AMCG00003534 id2,LOC106566577 other downstream 356907 8649125 ~ 8652470 (+)
AMCG00003541 asap2,LOC106566627 other downstream 608238 8900456 ~ 8941751 (+)
AMCG00003544 NA other downstream 783672 9075890 ~ 9106765 (+)
AMCG00003551 NA other downstream 963610 9255828 ~ 9263468 (+)
AMCG00003570 NA other downstream 1485290 9777508 ~ 9781756 (+)

Expression


Co-expression Network