AMCG00003533 (rnf144a,rnf144aa,LOC107752753,LOC106610698)


Basic Information

Item Value
gene id AMCG00003533
gene name rnf144a,rnf144aa,LOC107752753,LOC106610698
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8317038 ~ 8337650 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003533
AGACCTCCTCTGACACCATGACTACTGCCCGGTATCGGCCTACTTGGGACTTGGCCCTTGACCCTCTGGTATCCTGTAAACTGTGCCTTGGGGAATTTCCATTGGAGCAAATGACAACCATCTCGCAATGCCAATGCATCTTCTGTACACTGTGCCTAAAACAGTATGTGGAAATCCTGATCAAAGAGGGCCTAGAAACTGCGATCAGTTGCCCTGATTCTGCCTGCCCAAAACGTGGGCATCTACATGAAAATGAGATCGAATGCATGGTTGCGGCAGAAATTATGCAAAGATACAGAAAGCTACAGTTCGAAAGAGAGGTGCTATTGGACCCGTGTCGTACGTGGTGCCCCTCTTCATCCTGCCAGGCTGTGTGCCAGCTGAAGGAGATGGAGACGCCCGTTCCCCAGCTGGTGCAGTGCTCCGTCTGCAGCCTGGAGTTCTGCTCAGCCTGCAAAGCCAACTGGCACCCGGGGCAGGCGTGCCAGGAAAATCTGCCTATCACATCATTTCTGCCAGGGGAAACCAGttcATTCTATAAGAGTGATGAAGACGATGCTCCTATAAAAAGGTGTCCAAAGTGTAAAGTGTACATAGAGCGAGACGAAGGCTGCGCCCAGATGATGTGCAAAAACTGTAAACATGCCTTCTGCTGGTATTGTCTTGAATCTCTGGATGATGACTTCCTTTTGATACATTATGACAAAGGACCTTGCCGCAACAAGCTCGGCCACTCCAGGGCGTCTGTAATCTGGCACAGAACTCAAGTGGTTGGGATCTTTGCAGGCTTTGGTCTGCTCCTGCTGGTTGCCTCTCCTTTCCTGCTCCTCGCCACGCCGTTCGTCCTCTgctgcaaatgcaaatgcaacaaAGGAGATGACGACCCGTTGCCTACCTAAGGGGGCCGGACGGCAACATGTTTCAGCACAGGGGCCGAACTGGGGGCCGGGGCCACTGGGTTGTGTTCTAAAGACGTGGTTGGCAAGGGAGGTATCTAGGCATAACCACTTCCAAAGAGCCGGCGCCGGTTGCAAGTGGCAGGAACTCGTTTATTTTCAGGCTGAGGGAGTGCAAGAGAGTTAACTTCTTAAcgtgtttttataaatattatgttatatatCACAGCtctgttaaaatgtgtttgaccGTCAGAGAATCCCATTTcccattaaaaacatgaatatcaAAACCCTAGGATTCAGGTTATCTTGCAAAAAACATCACTACATTAATGTTAAAAAGAGACTTTACAATGTCCACAGGAATGCCGCTCTTTAATGGAATCTGACTACATTGACTACCTATTAAATAATTGCTGCAAATACATTGAACAAAGCCATGGGTTGGTTTACTGTTCATTTTTTGCAGTGGTAATCAAAATTAGTGTTATTTGTGTCAACAGGTGCTCACAAAAGTAGGAActttgtgaaagaaagaaaatctaacAGTCCCAATTTCATTCAATTCTAAAAACTGCAGATTAAATGGTAAATTGGTGATTTTCAAAGGTGTTCGAGTGCAGATtttgcttcctgttttattttaaagcagttgtaaatgtttacagataggaacacacaattatatctacattattattattattcttttcattttaacataacTGAGGACAATTATCTATAGTTTAAAGGAAATGTTGCACCAGAGCAAGTCTAGGAAAGTCATCCTGTGAAAAGCAGTAATGCAGCAATCCTAcctgaattgtttttctttgtttttcagctttaaACGTTTCCAAGTTTGTTTTATGTGCAACAGCATATAAAAGCCAATTTCAAAACTCTGAATATTGTTAACTGCCAGTGCTAAAAGTATTAATCTGTACTGTTTGTAGAATTTAAGCCTCTTTGTGAAATGGGGCTAAATGGTTGTAAATAAAGTCTTACTATTGTTATATCCTTTTCAATTTACCTATACAGCTtgaacacacatttacatttgcaaaaacCTGTAGCATCTTTCCTGAAAAGTTTTTATTCGAACAGGGGGACAATTTACAATCGTAACAGTTGTAATCTTTTAAGTGTGTCCATGTGTTTTCAAGTTGAATTTCGCATCCATGTAAAGCATCTCACTTGTCTGGTCTGTTCAGTTCCACCGCTTCAGAGAATAGTTTCTGTTGTGAACAAagtgtttgctttttatatcaCATTAGGGTCAGTTTTAAGGTCTACTTGacttttcaaaattgaaaacagctttgattaattaaaagatAACAAAGTAATCTTGTCAATGATCCGTATTTAAGGATcgtatctaaatatatatatatatatatatataattttgcatAAAAAGTAAAAGGTTCAGGTAATGGGCAGTGTTCTGCAACCCTGTGGTGGTTAACGTAAACACATTCttgaataaaatacttttttttttttcctcaagaatcttgtaattaaaaatgactgtTCATGTTCCTGTACAACGTACCCAAGGTCATACTGAGACCTAATGGCAGATGATACCAATTCATACATTCAGCTGTAATTGTGGCAAATAATGGTTAATGCATCTTTGTTGATGATTTCAAATTGCTTTAGATTGTTGGATTTCTATGTGGatatttgctaaaaaaaaaaaaagaaaaaagaaaaatacaaatccgAATGCTATGTTTTACACCTCACAATTGTACAGCCATTAGCGAGTACGGTGGGCTAGTTACTTTCATATCAATACAGCTCTGTCCTTTATTGGCTGAATACAGGGTAGTTTAGATTTAGACAGGGTGAAGTTTTACCCATCTACTTTGAATATAATCTGCCTCGCCCTAAATTGGGTgtgatcaaatatatttaattgatcaaTTGTTTTAGATCATGcacatatgtaaaatatatcaacCAAAAAGGAATTCACTGAACTGTATGAATGTATGATGAAgaagatgatgattattaataataatctccaGTTAGCTTACAATAGGTCCTGTAAGCCACACCACAGTATCTATGCAAGTTTATACAGATTTGCAAAACAATGTAGAACCTATAACGTCGGTTAATGTGACATATCGTGAGATGTATGAAACTTCAGTTAATACCCAATGCGGTGGTAATGTAATGCCCATTGTGTCACAAAACAAAGACTGGTGTATGAAATTGTATCAGGGACAAACAAgcctatttttcattttgaattcagTCAGGTTAAATTTATCTTGGCTTCTGTCAGTCCTACTTTAAGGAAATCCAAAGAAGAGAGGCCTCAGAAATTGTGCCTGCGCTGAATCCTTTTCAAAGATATATAGCAGTCATTGGGGACATTTGGATTCTGTTGTATGTACATTCACCATTAAGTGTGGCATATGGCAAAGATGACACTTGGAACAATGATGctgcattgcattattattattattattaatgttattgtatttcataGAACAACTTTTTAGGGTAAGGCATATCTCAAAGATCAAAGCACCATGGTGGAATatgatttgtctttttgtttctgaagcTCAACCTGTCTCATTATTTGAAATTGATCAAATCAGAACAGTATATAGCAGTGTTACAGGCTTTCTTGCTTCAAAAAAGGAAAGGTAgaaaagtgaaatgtaacaCAAAGCCTCCACTCTTTTTTTGGCGTCCGTGTGGTCCattaagaagagaaaaaaacttaCAAAATCCTGTGCTCCCCTGGTAATTCATTCTCgcaatttacttaatttaaaggaaataatacaggAAGATTGACCCATttacaagaaacacaaacacaaaaatgagagagaattaccacaaagattaaaataatggtGCAGTCCACTACAGGGCTTCCCTTTCACGAATACAGTATTGccaaatgtatttgtctatATCTTTACTTATCTGCATGACTCTTCACAGACCCTTTAGTGAAGGACgtcatcatttatttacatgCTCTAGTCTGTTTTTATAGTTCCATTCACTGTAACGGACCCTTTGGGAAGTCAATTTGCTAACTTGCACCGGCCTAATTATATACTATAGCTGCAAGCAATGCCTTGCAGCAGTTTTTATCTACTGTAGCATTGATCGGGCACCCGTTTCATTCAATTGTAACATGTTTAGCCAATATCGGTCGGTGAATCTTCCACATTAGGTATGCAGTCTTTTGTTTCCATTCTACAAAATGTGCTTTGTAGGCCCTGTAAGATGTTTTGTTGCTGTTCGTGACTATGAGTTAGTGTTGTTTTCATCCAAAAAATACCATTGACCCATAAAGTGTGGAGATTTtcacaaaatcaataaattaattgcCCGTTAAATTGAAAACTTTGCATATTGTCACCATTATAGGCTTGACGATGACAGGGATGTAAATGTTCGTAAGACTTCTTACTGAAGATCAGCGCAACAAATTTTATGAtctccttgtgtgtgtgtgtgtgtgtgtgtgtgtgtattttggggACATACTTTGAAAGATCAATTCTTAAAAAGATTGTGACCACTGTTGTCACTTCTGAAAGTCCCTAAGCAACATTTAATCACTATTTAATCTCTTATTTTGCGGGCCGAATTTGAATTAAATCATCTTTTCAATCAGTTACATGCCCCATTTTCTAATGCATTGTGCCAGGATTTACACTGTAGTGAAAGACATGAACAATGCAAGTCTTACATTTAGAATCATTTGCAAATATGAATGATGTGAAGTCCTTTTTGTTGCATCTTGCAGTACTTTAAATTCATCAGCCAACTTATGTATTTCCTCCTATAAGCATGTATGTATCTGGTTCCTTTTCACTGCTACAGTAATACCACAGTCAGTATGTTGCCATGTATCCAGGAGGTTTATTATAagtgctgaaaataaattaggaCTGAATTTACCCATcagtatgtgtttatatacatttctagtACCTAGTAAGTTACGAAAAAACTCTAATCCATTTATTTCCATCTTGCATTTTCCCCAGTCATATATAAGCAAATCTGGGCGTTGTTAatatgctgtatttaaaaaaatattttatttccattatcatattgaatgaataaatgtaagTATACTGTACCTTATTAAAGCTTCTCATGAGTTATATTCCTGGTTTCTAGTTCAGTAGCATCAATAAGCCATTATCTGACTAAGGCCTTGAAAACTTAGACCTGCCTGCCAActgcaaattattacaaatgtaaaccCTTTTGCAGTTTATTTAGTTGTTAGAGGCCACATtcaacaactaaataaaattggGTACATTTGGTTTAGGCGTATGATTGCTCTAAGACCATGCAAGCTCCACAGATACTAGcaactacattaaaataattagttaagCCTCATggcaatttaaatgttatgagAATTCCCATAattcaggttttatttgtaCTGTCAAGTGGCAATGGATAGCTTAAGGCTATACAAAATGaatcattatgaattatgaCTAAAGCATAACTTAATACATTAGGAAACTGTATAGAGTGTTGAGACTTTCCAGTGATCCTAGTGTCCTTATTGGAATAATTTgggtttttagtttatttctaaATTCAGATCATTTGTAGGGATAATTGTTCCAATGAAGAAAACTCCATCACACTTCTTCTGAACAGAggttgtttggttttgtttcgtGGAGTCAATGTACTGCACATTTTGTAATACGTTATTCGAATTCGGTGGTATTCAAAACATTAAGACAGTTATATAACTTGTTAAAACCATGTACTTTGCCTTTGTTGGTGATGGGCCACAAGGTGAGGTCAGAATTGTTTGAAAAGCCTCTGTTCAGTTTTCTAGTCAGACTCTTGGCcggaggggaaaaaagctgcacaaattgtaaacaaattaatttgttaatctGACTAATTGCAGTTGATGATTCTCACACAAAGCTGAGTTTACAGGGACTAACTACAAACTAGTAGATAGTTGATCAATTATGTACAAAGAAGCACAGACTGCACATTGGAAATTGCAAGCATGGGCTACCCGGGTAATTGGCTTTACTGTTTACTAGCTCAAATGTATGAGCATCTTGTGCCATTGATTGTTcaacaattacatatttgtgaTGATAACATCACCTAAAACAAGTGTATAAGACAATATTTATAGAGATCTCTTCCAGTATATGTaaaaattataaacattaatttgcattttatagtTCTGTAATTTACTAGCAGTGTATgacatcatttatatttaattattttttactgattaaaaaaaaaaaaaagtttaataattgtatttgtttttattgtatatggAAGGACATTCTACCTGAATTGTAACCTTGTATACTGGTATGCATGAAAGAGTCTTGTATATACCAAATTGTAGTTCAATTCCCTTTTAAAATTCAATGTACTTAAATGTATCTATTGTGCCACTAACActgtgatattaaaaaaaaaaaagaaagaaaatgaaaaaaaaaaatctgggtCTCTGGATTGAGTCCTGTGTTCAATATGAAGATCTTAGATGGTTGATCTGAATCAGTAAGTCATTTAgccacataaaacaataaatctaATGGTAGCCTGtaactgtttattatttaaagaggtattaaactgtaaaatggctgctaattaca

Function

symbol description
rnf144aa Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in Golgi apparatus. Orthologous to human RNF144A (ring finger protein 144A).
rnf144a Enables ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Located in Golgi apparatus.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF144A

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K11975 RNF144; E3 ubiquitin-protein ligase RNF144

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003533 True 6589 mRNA 0.36 7 8317038 8337650

Neighbor

gene id symbol gene type direction distance location
AMCG00003532 rsad2 coding upstream 24820 8284827 ~ 8292218 (+)
AMCG00003530 LOC108258189,LOC103368564,LOC106533618 coding upstream 336841 7978775 ~ 7980197 (+)
AMCG00003526 NA coding upstream 769484 7532553 ~ 7547554 (+)
AMCG00003525 NA coding upstream 785913 7518051 ~ 7531125 (+)
AMCG00003521 NA coding upstream 802628 7505463 ~ 7514410 (+)
AMCG00003535 NA coding downstream 481762 8819412 ~ 8842419 (+)
AMCG00003542 itgb1bp1 coding downstream 620491 8958141 ~ 8959534 (+)
AMCG00003539 cpsf3 coding downstream 628061 8965711 ~ 8977843 (+)
AMCG00003540 NA coding downstream 641950 8979600 ~ 8982021 (+)
AMCG00003545 grhl1 coding downstream 772191 9109841 ~ 9131160 (+)
G1271 NA non-coding upstream 40055 8275762 ~ 8276983 (+)
G1253 NA non-coding upstream 520184 7796451 ~ 7796854 (+)
G1241 NA non-coding upstream 566573 7523861 ~ 7750465 (+)
G1242 NA non-coding upstream 788580 7526859 ~ 7528458 (+)
G1218 NA non-coding upstream 827157 7489445 ~ 7489881 (+)
G1291 NA non-coding downstream 2616 8340266 ~ 8340592 (+)
G1303 NA non-coding downstream 106090 8443740 ~ 8444024 (+)
G1343 NA non-coding downstream 323382 8661032 ~ 8666927 (+)
G1347 NA non-coding downstream 361816 8699466 ~ 8700554 (+)
G1375 NA non-coding downstream 506177 8843827 ~ 8844082 (+)
AMCG00003524 rps7,LOC107668222 other upstream 813023 7498040 ~ 7504015 (+)
G1012 NA other upstream 1822133 6487692 ~ 6494905 (+)
AMCG00003480 NA other upstream 2982286 5303450 ~ 5334752 (+)
AMCG00003469 NA other upstream 3794638 4514031 ~ 4522400 (+)
AMCG00003473 NA other upstream 3861896 4452564 ~ 4455142 (+)
AMCG00003534 id2,LOC106566577 other downstream 311475 8649125 ~ 8652470 (+)
AMCG00003541 asap2,LOC106566627 other downstream 562806 8900456 ~ 8941751 (+)
AMCG00003544 NA other downstream 738240 9075890 ~ 9106765 (+)
AMCG00003551 NA other downstream 918178 9255828 ~ 9263468 (+)
AMCG00003570 NA other downstream 1439858 9777508 ~ 9781756 (+)

Expression


Co-expression Network