AMCG00003536


Basic Information

Item Value
gene id AMCG00003536
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8653758 ~ 8672876 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003536
ATTTCAAAGAATATCCCAACCACCAAAGATGTGGAGCCCCTGCTGGAGATCGATGGGGACATCCGCAGCTTTGAAGTCTTTCTCTCGTCCAGGACGCCAGTTCTTACAGCACGAGACATTAAAACCTTCCTGCATTGCACTGTCAATCTGGACCCCAAACTCCGAGAGATTATTGCAGATGTGCGAGCTGCCAGGGAGCAGATTAACATGGGAGGGATTGCCTATCCCACGCTGCCCCTGCAAGACGCTCCCCCCCGGGCGGCCTCTGTGTTCAGCCAGCATTCGTCCGCCTGCTCCCCCACCACCTCCTTCAACGGCCCCTTCAACCCCCCCAGCGTGGTCTCGCCACAGCCGCACAGCAGCTACTACAGCGGCATGACCGGGCCCCAGCACCCCTTCTACAACAGGGATGTTATCGAGGAGGATGCCGACGAAGGGCTTCCTTCCCCCACTGTCCCCCCAATGGGCAATGCGTCAGTGGTGTCTGGGGCTCCTGCCGTGCTGCTCAGCTCCATGAACACAGATGCAGTTTGCGAGAGAGTCAAATTGATAGATGGCATTGACATGAGCATGATACCCCAGTATACTTCCACGATTAAGAAGGCAAATGTGAATGGCCGTGTGCTCTCTCAGTGTAATCTGGATGAACTGAAGAAGGAAATGTGCATGAACTTTGGGGACTGGCAGCTTTTCAGAAGCATGGTGATGGAGCTGCGTCACGTGGAAAACCAGGTGATCCACGAAGATTCCCGGGCTGCCAGCGAACAAGGAAGCAGCACGATTGGCCACGGCGAGCCAGCGGCCCGGCGCCAGGGCCCGCCCTCTGAAGGCGCAGTCAACCCCGATGGCACCCTCATGTACAGCCTCAACTTCAGCTTCGAGGAACTCAGCACAGTGGGCCTGGACGAGCCGCCTCGCCCAGCGAACCCCTCCTGGACGACGGTGACGCACCGGACTCCCAGCATGTCGAGCCTCAACTCCCAGGAATCGTCCAACGACATCTGCAAGCTCACAGACAAGCAGCAGGCTGAATACCGAGACGCCTACAGGGAGTACATCTCACAGATGTCCCAGCTGGAGGGTGCTGGCAGCACGGGAGACAAACCCGTGCAGCCCCACCCCGGCCAGTTCATGCAGGGCGGTTCTCTGCACTCGGGTTCGGAAGACAAAGGCAAGGAAGGAGAGCAGGACGGCAGGAAGCCCTTCACCAAACGAGGAAGCGGGAAGCCCTCTGACATGGTGGACTATACCTCTTCCACTATCTCCACGGCCGACGCCTCCCCTCTGGACCCCATCACCGAGGAGGATGAGAAACCGGACCACGGTGCCTCCAAGCTCCTCCTGGGAAGGAAGCCATCATCCGAAAGGGTCAGCATCTTCCAGGGAGCAGACCTGAAGCTGAAAGGCATTGGCCTACGCTACCAGAAACTGACAAGTGACGAGGATGAATCGGGGACCGAGGAGTCGGACAATACTCCTCTCCTCAAGGACGGGAAGGAGAAGAAGCTGGATGCCAAGTCCGCCGAGCACAGCCTGGAGGGGAGCCGGCCCTTCGCCAAGGGGAAGGAGTATCTCTCGGATGCCATGCTGGATAAAAAGGACTCCTCCGACTCTGGGGTGAGGTCCAACGAAAGCTCGCCCAACCACTCCCTGCACGATGAGGAGGCCGACATCTCCCAGCTGGAGAAGGCCAACTTGATCGAGCTGGACGAGGACTCCCTGGCCAGGAAGAGGGGCCTACCACGCAGCCTGAGCGGTCTGCAGGATCCCGCCATTGCCCGCATGTCCATCTGCTCTGAAGACAAGAAGAGCCCCTCTGAGTGCAGCCTGATCGCCAGCAGCCCCGAGGAGGGATGGCCCTCATCCAAAGTGTACAACCTCAACCGCACGCCCAGCAACACCACgctcaacaacaacagcaacgcACAGGCCAACAGCAGGCAGTCCATGGAGGACTCCGAGGGAACCCACCACGACTCCAGGCATCTGGAGAACAACGTCTCCCCGGTCATCATCACCCCGGGCTCCAGCACCAACCCCACCTCGGTGCACAATGAAAACCTGCGAGGGATCCACGTCAAGAGGGGCCTGAACACCGGCTACAGCAGGCACTCCAAAGACGGAGCCGCGCCGGAGCTGCACACCGTCACCTCCGCTGACGCCGTAAGCTTTGGAGAAGAACGAGAGAGCATCCTGTAATGTGTGGCCCCGGGGGGTCGCCAGTTTTGATTGGATGTTTGGTGTTGTGGTATAAAATCTGAAGTCTTGAAATCTTTCCGTAAAAAGTGGTTGTGTGTTGCGAGTTACATGTTAGATGCAAACGTAAGAAGCTCCTCTCTTGAAGTATGTTGCTTTACTGCAGCGTTAACACCGCTTCACGCCAGGCCAAACATTTCCCCGTTGTGTTAATCAGACGCCGAGCATGAGGCCCGTTAAATCAAAGGTAACTGGCAAATTTCAAGTGCACATTGCCCTGCCAGGCCTGCTTAGGTTAATATGAGAGTACAGTTTGAAGGTCTGGAaattaagggggaaaaaatgaagaaagagattttaaaaaagaacCAATCATTAGAAGAGCACTTCTTTCGACCTATAAATGGTGTTGTAATTCAGATAAGTGTTTGCTTATGACTGTTCAGTCCTTTATCATGCTCGTGAAGTGGTAGTTAAAGAAAATTGTGGAGTGACTAATGATATTTGAAACTGCCAATGTAACTGGAgagtaaacaaatatttaaagtagTCAGTGTTTCTACTGCATAATGTACCCAGTTGTGCTTATTCATGTCTGGTAATTGAAATAAGACCGTTGATTAATTTGATGGAACCCTTAAATAATGATAAAGGCTGTTTAGAAAACTTGACTCCTTCCAAAAAACACAGACCTCTGCCATGTTTGAATGCCAAAAGTGTTAGGTGTAGTGTTGCTGTGAATTTATATCATTTAAACCTCACGGTAATGGAGTTACCTTGCCGGTTCGTGAAACTGTTAACCTCTAGACTACTGCCCCCGGATAGGCTTGAGGAGAAACAGAAGTGTTGCTCTTCCTTGCTGTCTGAGAATGTTAAGTGTTTAATGCAATTCAAATCTAAGTGTATCTATGTGCGATCAAAAGCTAGCACTTGTCAGTACTGCTTATTGTTTGAATAGTGGAGATGTTGTTCATTGTCATATGCTTCAATTGTGCTGTGGTCTGTTTAGAGCAATACGTGTCTCTATGAAGTTACGATTGTTAAAGAAGTACCGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003536 True 3253 mRNA 0.53 7 8653758 8672876

Neighbor

gene id symbol gene type direction distance location
AMCG00003531 NA coding downstream 370014 8278896 ~ 8283744 (-)
AMCG00003528 NA coding downstream 1155666 7489697 ~ 7498092 (-)
AMCG00003519 adi1,LOC102789913 coding downstream 1206885 7421056 ~ 7446873 (-)
AMCG00003520 tssc1 coding downstream 1246144 7381098 ~ 7407614 (-)
AMCG00003518 NA coding downstream 1426240 7221488 ~ 7227518 (-)
AMCG00003538 LOC106571256,LOC107668217,LOC107693235,LOC107549106 coding upstream 13170 8686046 ~ 8706309 (-)
AMCG00003537 NA coding upstream 48368 8721244 ~ 8751203 (-)
AMCG00003549 NA coding upstream 314229 8987105 ~ 9005791 (-)
AMCG00003548 NA coding upstream 479008 9151884 ~ 9155291 (-)
AMCG00003553 zdhhc14,LOC106574720 coding upstream 509225 9182101 ~ 9207165 (-)
G1283 NA non-coding downstream 361546 8291718 ~ 8292212 (-)
G1281 LOC107655310,LOC107707684,LOC107553276 non-coding downstream 363996 8288835 ~ 8289762 (-)
G1268 sox11,LOC106958914,LOC103147284 non-coding downstream 599421 7976780 ~ 8054337 (-)
G1254 NA non-coding downstream 856900 7796450 ~ 7796858 (-)
G1252 NA non-coding downstream 864844 7788673 ~ 7788914 (-)
G1374 NA non-coding upstream 168602 8841478 ~ 8841755 (-)
G1381 NA non-coding upstream 179321 8852197 ~ 8852441 (-)
G1405 NA non-coding upstream 284651 8957527 ~ 8964495 (-)
G1415 cpsf3 non-coding upstream 301934 8974810 ~ 8977849 (-)
G1492 NA non-coding upstream 501979 9174855 ~ 9179981 (-)
AMCG00003484 NA other downstream 3297290 5344070 ~ 5356468 (-)
AMCG00003476 NA other downstream 3844769 4583142 ~ 4808989 (-)
AMCG00003459 NA other downstream 4758234 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 5114791 3536172 ~ 3538967 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other downstream 5223486 3394657 ~ 3430272 (-)
AMCG00003550 NA other upstream 336241 9009117 ~ 9082850 (-)
AMCG00003572 NA other upstream 1180323 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 1201794 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 1952470 10625346 ~ 10633112 (-)
AMCG00003586 NA other upstream 2278208 10951084 ~ 10956353 (-)

Expression


Co-expression Network