AMCG00003549


Basic Information

Item Value
gene id AMCG00003549
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8987105 ~ 9005791 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003549
GTGCAATAGTACTTCCGGGTGTGGGCGTCTGCGTCTGGGAGCGGagtaacagtttgttttttagtttgaaCACTATTCAATATTATCGCAGTTATGGCACTTCACAGCCAATTATTGTGATTAGGGTTTATTCAGTCCAATTTCGACAGCCATCCGGTTTAAGTTTCGTAGCGCTTCTGTCAGGCCTTTCGGATGCGGAAGGGACTTCATCAACTCAGTCGCTATGTTGACATCAAGCAGAAGGAAAGCAGGAGCTAATGGCACAGGGGGGCAGTTTCGGGTCATGTCTGTCCTAGCCCAGACCAGGGTGTTTTTAACTTCCTTGGTGCTTTTAGTTTCTCTCAGTTGGGTGGATGGTGGCAGGAAGCCTTTAGTGGGAAAACTGGAAAATGACCTGGAGTTGGAATCCCTCAACGCAGTGCTGGAAGACTATGATGTCTTGTCTCTCTCAAGTCTCCGGCACCACTCTGTGAGGAAGAGGGAGGTGAGCTCTGAATCCCAAGTGGAGCGGCTTCTGAGCTTCTCGGCCCTTAGGAGAAATTTCAACCTGTACCTGACTACAAATACTGACCTCTTTGCTGAAAACTTCAAAGCTGTGGTCCTCGATAAGAATGGGGTAGAAGATGTTTACGAAGTTCAAAAGAAAAACTTCTATACTGGACATGTAGTAGgGGAGGAAAACTCTCGGGTGCGAGCCCATATTGATGATGGGGACTTCCTGGCCCACATTCAGACCCATGATGGAGAATACAACATTGAGCCTTTGTGGAGGTTCACGCAGTCACAGCGCGACGACCGGCTCTTGGCCTACAGGTCGGAGGACATTAAAGACATCAGCCGCATTAATTCTCCAAGCGTCTGTGGATACATCAACGCAGTCGAGCAGGACCTGCTGCCCGAGGAGGCCAGGAGAGCCAAGACAGAAGAAGAAATAGTAAAAGAGCCCCTCCATCgagaaaaaaggcagaaaagtGCCCAGAACTCCCAGAAAAACACCTGTCCGCTGCTGGTGATTGAGCTGATTGATCGAGTGGACGACATGTACAGGAACACAAGCTGGGATGAGCCTGGCCTTGATGGGATCGGGGTACAGATCTTGCAGataCACATCAACAAAGAGCCAACTCCTACTAAAAGCCAACATTACAATATGAAGGGCAGCCCCACACCGGGGAGGGATGTCTGGGATGTGAAGAAGCTGCTGGAGCAATTTAGTTCAGATATAGCACCCAATGCCTCAACTGCCTGCCTGGCACACCTGTTCACCTACCAAGACTTCGACCAGGGAACGCTGGGACTGGCGTATGTCGGCTCTTCTAGGAAAAATGCTCTCGGGGGCCTCTGTCCTAGAAagtATCTTCCTACACCTTCAGCTAAACCCATTTACCTGAACACTGGTTTAACCAGCACCAAGAACTATGGGAAAACCATTTTAACCAAGGAAGCAGATCTGGTAACCACTCATGAGTTGGGCCACAACTTTGGAGCTGAACATGACCCAGACAACGTGCCCAACTGCGCACCTAACGATGACAACGGGGGGAAGTTCGTCATGTTCCCCATAGCTGTCAGTGGAGATCATGATAACAACAAGAGGTTTTCCAGTTGCAGTAAAACCTCCATCATGAGGACGCTGACTACAAGATTGGACGAATGCTTTAAGCCGAGGAACAGCAAGGTGTGTGGCAACTCTCGAGTGGAGGAGGGCGAGGAATGCGACCCTGGGCTGCTGCATCTGCACGACGACCTCTGCTGCACCTCCGACTGCAAGTTCAAACCCCATGCCCAGTGCAGTGACAGAAACAGTCCCTGTTGCAAACGGTGCAAGTTCGAAAGTTCTGGGAAGGTCTGCCAAGAAGCCATCGGTGCCACTTGCAAGGGGCAATCAACATGCACAGGCAACAGCAGCGATTGCCCCCCCCCGACCAACGCCCCTGATGGAGACACCTGTGTGGACATGGGCCGCTGCCGCAGCGGAGAGTGCGTGCCGTTCTGCGAGGTCGTCAACCTCCGCCCCTGCGCCTGCAACGAGACCGATAACTCCTGCAAAGTGTGTTGTAGGGACCCTTCAGGAGTGTGCCAGCCCTACAAGGACGATAAAGGAAGCTTCCTGTTCCTGCGCAAAGGCAAACCCTGCACTGTGGGCTTCTGTGTGGAGAACGGAAAGTGTATGAAACAGGTTCAAGACGTCATCGAGAGACTCTGGGATTTTATTGACAAACTGGACATCAATACGTTTGGGAAGTTCCTGGCAGATAACATTGTGGGCTCGGTTGTGGTCTTCTCTCTGCTCTTCTGGATCCCCCTCAGCATCCTGGTCCACTGTGTGGACAAAAGACTTGACCAGCaatatgaagaaaacaacaagtcTCTCTTTCACCCCAGCAATGCGGAGATGCTAAGCAGCTTGGAGTCGGCCTCAGTGCGCATCGTTaagcccccaccccctctgcTGACCAATCGCTTCCAGCCCTCGCATCCGCCCGCCCCCAGCATGGCGACACCCCCCACCGGCTCCAGCACAGGCCCCAAGTTGGAGGCACCCCGCATGGCCACTATCGAAGAAGACCCCAGCAGCGACTCCCACCTGGATGAGGCACTTGGGGAGGACTTTGCCAACAGTGGAACGCCCGCTAAATCCTTCGAGGACCTGACCGAACAGTCGACCACTCGCAGCGACAAAGCTCTGGCCTTCCGCCTGCAGAGACAGGCGCGCATCGACAGCAAGGAGACGGAGTGCTAGCTGCCTAAATCCAGCCCCCCAACTACTCAGGAGAGCAGGGAGtaaggcagagagggagggaggg

Function

GO: NA

KEGG:

id description
K06059 ADAM17, TACE, CD156b; disintegrin and metalloproteinase domain-containing protein 17

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003549 True 2807 mRNA 0.53 19 8987105 9005791

Neighbor

gene id symbol gene type direction distance location
AMCG00003537 NA coding downstream 235902 8721244 ~ 8751203 (-)
AMCG00003538 LOC106571256,LOC107668217,LOC107693235,LOC107549106 coding downstream 280796 8686046 ~ 8706309 (-)
AMCG00003536 NA coding downstream 314229 8653758 ~ 8672876 (-)
AMCG00003531 NA coding downstream 703361 8278896 ~ 8283744 (-)
AMCG00003528 NA coding downstream 1489013 7489697 ~ 7498092 (-)
AMCG00003548 NA coding upstream 146093 9151884 ~ 9155291 (-)
AMCG00003553 zdhhc14,LOC106574720 coding upstream 176310 9182101 ~ 9207165 (-)
AMCG00003552 zdhhc14,LOC106610784 coding upstream 248063 9253854 ~ 9254096 (-)
AMCG00003554 NA coding upstream 262712 9268503 ~ 9312491 (-)
AMCG00003555 NA coding upstream 401586 9407377 ~ 9429572 (-)
G1415 cpsf3 non-coding downstream 9256 8974810 ~ 8977849 (-)
G1405 NA non-coding downstream 22610 8957527 ~ 8964495 (-)
G1381 NA non-coding downstream 134664 8852197 ~ 8852441 (-)
G1374 NA non-coding downstream 145350 8841478 ~ 8841755 (-)
G1363 NA non-coding downstream 317274 8650023 ~ 8669831 (-)
G1492 NA non-coding upstream 169064 9174855 ~ 9179981 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding upstream 844900 9850691 ~ 9851427 (-)
G1631 NA non-coding upstream 846278 9852069 ~ 9852338 (-)
G1744 NA non-coding upstream 1409147 10414938 ~ 10415887 (-)
G1856 NA non-coding upstream 2044360 11050151 ~ 11051078 (-)
AMCG00003484 NA other downstream 3630637 5344070 ~ 5356468 (-)
AMCG00003476 NA other downstream 4178116 4583142 ~ 4808989 (-)
AMCG00003459 NA other downstream 5091581 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 5448138 3536172 ~ 3538967 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other downstream 5556833 3394657 ~ 3430272 (-)
AMCG00003550 NA other upstream 3326 9009117 ~ 9082850 (-)
AMCG00003572 NA other upstream 847408 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 868879 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 1619555 10625346 ~ 10633112 (-)
AMCG00003586 NA other upstream 1945293 10951084 ~ 10956353 (-)

Expression


Co-expression Network