AMCG00003560


Basic Information

Item Value
gene id AMCG00003560
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9564652 ~ 9591471 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003560
ATGAGAATGGGGAACTCTGATAGCCAGTACAGCTTTCATGGTTCGAAGAGTAGTGGCTTCATCATCCCCGGGAAACCGAAGCCCTGTTCCCTGAAATTCCGTGCCGTCCACGCCAAAGACGAGCAGGCCCATTCCCCGCTCGGCTGGGGGCGTGGTGGGGGCGGAGGAGGGGGCTCTGGGTACAAGTCCCGGGCTCTAGCCAGGGGCTGCCTCTCCCAGCACAAGAGCGGCCAGCCCTACGCCTCCCGTCATTATGACTATGTGACCAAAGGTGGCAAGAGCAGCGCCAACAGCAGCAAGCACAAGCCCGGCTCTCCAGATGGCTGCGGGCAACGCGGCAACCGGCTCCTCGTGCCTGACAAAGGCTTCCACTACTTTGGTGCCGAGACGACGGAGAACAATTGTGGAATCAACAAGGCGTCTCCTGAATGCAACGGCCTTCTGATAAACGGCCTCCACACCCCGGAGAAGATCTCCTTGTCAGAACTCGCCGATGACAAGAGCAGCCCCAAGGTGCTCATCAAAACACTGGGCAAGTTTGATGGTGCCATGAGGGTGGAGTtcaccaacaccaacaacaacaagctGGTGGTGGACGAGTCCTCGGGGCCCGTGCAGCTGCTGAAATACTCCCCCACTCTGGAATCCACGCCCAGCAACCCCGAGATCCTCAGGAGACACTCCCAAACGGCGTACGAGACCGACCAGAGCCTGGGGGCAGGTGACTCGGGCGTGAGGACTAGCAAGGGAAGCTCTTTAAGCTCCGAGTGCTCCTGGTACGACTCGCCCTGGGGGAATGCTGGAGACATGACTGACATGGACAACCCTTACTCATCCGTCAGGACTTCTGACAGCAACGCTGGGGAGACTGTCTTACCGAGCGACCAGAGGAACTTTGAACAAAGGGTGTCTCCCGTGTCCCTCCAGGACCTGTACAGGAACGCCAGCCTGGCAGCCACCTTCCCCGCTGACAAAGAGCTGTCGGCACAGTACCTGGACGTGCCTCGCAGTCACCACCGCGCCTCCTTTGTCTCGGTCCTCGATGTGGCCACCGAGGCAGAGTGCCTGGGCGCCAAGCAGTACTCCTCCTACACCCTCCCCTGCCGCAAGTCCAGACCCATTGTGGACAACAGCACCAAAAAAGAAACCCTGAAGAGCAGAATGAGGCGAATAAGCGACTGGACGGGGAGCTTGAGCAGGAAGAAGAGAAAGCTGCAGGAACCCAAGTGCAAGGACACCAGTGAGTGTTTCGACAGCGGGATCGACGGCTTCACGGCCGACACCAGCTCCCCCTCGCAGGTGTCCAGCTTGCTCTGGTCACCCAACTCAGGCCAGGCCTTCCCCACGCGCAGTGAGTCGGCCAACGCCCTGCACAATGACGCCCTGCGGCAGAACATCTACGAGAACTTCATGAGGGAGCTAGAGACGGGCCACTGCAGCCCCGAGCGCCTGGAGCCCTCCACCGAGACGGAGGAGACCAGCAGCGACTCCCTGGGCTCCCTGGAGCAGCTGGACCTGCTCTTCGAGAAGGAGCAGGGGGTGGTGCGCAAGGCGGGCTGGCTCTTCTTCAAACCCCTGGTCACCCTGCAGAAGGAGAAGAAACTGGAGCTGGTGCCGCGCAGGAAGTGGAAGCAGTTCTGGGTGACCTTGAAAGGCTGCACACTTCTGTTTTATGAAACTTATGGAAAGAACTCGATGGAGCAGGACTTCTCTCCGCGCTATGCCCTGTTTGCTGAAGACAGCATTGTGCAATCTGTTCCCGAACACcccaagaaagaaaatgtgttctgcCTAAGCAATACCTTTGGGGATGTCTACCTCTTTCAGGCTACAAACCAAACAGACCTGGAGAACTGGGTCACCGCCATCCATTCAGCCAGCGCCTCCCTGTTCGCCAAGAAGCACGGCAAAGAGGACACGGTGCGGCTCCTGCGCAGCCAGACCCGGAGCCTCATCCAGAAGATCGACATGGACGGCAAGATGAAGAAGATGGCGGAGCTCCAGCTGACCATCGTCAGTGACCCCAAGAACCGCAAGGCCATTGAAAACCAGATCCAGCAGTGGGAGCAGAACCTGGAGAAGTTCAACATGGACCTGTTTCGTATGCGCTGCTACTTGGCCAGCCTGCAGGGAGGGGAGCTGCCCAATCCCAAGAGCCTACTTGCAGCTGCCAGCCGCCCCTCCAAGATGGCGCTCAGCAGACTGGGCATCTTCTCCGTCTCCTCCTTCCATGCCCTGATCTGCTCTCGGGACGAAGCCACACTACGGAAGCgctccctgtccctgtctcaGCGGGTGCGCAGTAAGAGCGGGCTCTTCTCCTCCCTGAAAGGCCTGGACAGCCTCACCAAGCGCGGCAAAGAGAAGAGGCCCTCTGTGTCGCAGGTTTTTGAAAGCAATGGTGGAGGACAAATAAACCATCATACAATAAATCCAAGCAGCTGTGAGAGAATAGATAGCTCGGCCAACATGTACTCGACAGCACCACCTGAAGGCGGCCAGTGGGACAATGGGTTCGAAACTCCGACCTATGTCTACATGCCAGACAGCCAAGTCATCACAGTGCCAATCAAACGGGATCACATGGTTGTGGATGTGCTCTCCTCAGCGTGCAAGaagaaaaatctgGACCCAGCCCAGCACTGTCTGCGCCTGCGGAGGAGCGTGGGACAGACCGTGGAGCTCAGCACTCCTGCGTCCAGCGATTTCATTCAAGAACTGCTCTACGATGAGTTGGAAGTCTTCCCCTTGAATGTTTACCAGTTGCGTCTGTCGAGGCCTGCCAGCACGGTTGACTTTGGGTTTGCCGTCACGGGCCACGTGGATGGCTTCAGGAACAGCCGGATATTCGTCAGCGAGGTGCTTCCGGATGGGCTGGCGTTTGGCAAAGGGCTGCGGCCGGGGGATGAGATCCTGGTCCTGAATGGGAAGAGTGTGTGCGCCCTGGACCTCGGCCTGATGCAGACTCTCTTCAGCGAGCAGATCTTAAATCTCACTCTCCGAAGGGATGCTCCCGTCGACCTGCAGGGCTTGGCCTGGCCCGAGTCCGACACGGCTGACCCCAATCCGCCCATCCCGCCTCCCAACCAGTCCCAGCTCTTGGAGGAGTTCCTGGACAAGCACACAACTCAGGCCTCAGCAGACGTTTCCAATGTCCCTGATGTTCCCGGCACACCCCTAGGAACCGCCACTGATGACGCTGGGCTGCAGTCCCAGCCCGGAGAGAAGATGGAGCATCAGCGAAAG

Function

GO: NA

KEGG:

id description
K16847 TIAM2; T-lymphoma invasion and metastasis-inducing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003560 True 3246 mRNA 0.59 13 9564652 9591471

Neighbor

gene id symbol gene type direction distance location
AMCG00003561 NA coding downstream 9479 9543949 ~ 9555173 (-)
AMCG00003559 LOC103384102,LOC106610790 coding downstream 31075 9532915 ~ 9533577 (-)
AMCG00003555 NA coding downstream 135080 9407377 ~ 9429572 (-)
AMCG00003554 NA coding downstream 252161 9268503 ~ 9312491 (-)
AMCG00003552 zdhhc14,LOC106610784 coding downstream 310556 9253854 ~ 9254096 (-)
AMCG00003567 scaf8,LOC107680102,LOC107728963,LOC107571060,LOC107749595,LOC107675315 coding upstream 45000 9636471 ~ 9656474 (-)
AMCG00003564 NA coding upstream 83181 9674652 ~ 9686294 (-)
AMCG00003566 NA coding upstream 110231 9701702 ~ 9737863 (-)
AMCG00003565 NA coding upstream 156293 9747764 ~ 9759310 (-)
AMCG00003563 NA coding upstream 183425 9774896 ~ 9777368 (-)
G1492 NA non-coding downstream 384671 9174855 ~ 9179981 (-)
G1415 cpsf3 non-coding downstream 586803 8974810 ~ 8977849 (-)
G1405 NA non-coding downstream 600157 8957527 ~ 8964495 (-)
G1381 NA non-coding downstream 712211 8852197 ~ 8852441 (-)
G1374 NA non-coding downstream 722897 8841478 ~ 8841755 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding upstream 259220 9850691 ~ 9851427 (-)
G1631 NA non-coding upstream 260598 9852069 ~ 9852338 (-)
G1744 NA non-coding upstream 823467 10414938 ~ 10415887 (-)
G1856 NA non-coding upstream 1458680 11050151 ~ 11051078 (-)
G1935 NA non-coding upstream 1790401 11381872 ~ 11386054 (-)
AMCG00003550 NA other downstream 481802 9009117 ~ 9082850 (-)
AMCG00003484 NA other downstream 4208184 5344070 ~ 5356468 (-)
AMCG00003476 NA other downstream 4755663 4583142 ~ 4808989 (-)
AMCG00003459 NA other downstream 5669128 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 6025685 3536172 ~ 3538967 (-)
AMCG00003572 NA other upstream 261728 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 283199 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 1033875 10625346 ~ 10633112 (-)
AMCG00003586 NA other upstream 1359613 10951084 ~ 10956353 (-)
AMCG00003595 myo6,LOC106571274 other upstream 1471650 11063121 ~ 11116905 (-)

Expression


Co-expression Network