AMCG00003563


Basic Information

Item Value
gene id AMCG00003563
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9774896 ~ 9777368 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003563
GCGTCGGGATTGTTGCGGCGCTGCGTGGGTACGCATGCGCACTGTGGCAAACGTTTCCGTTAGTTGTTGCTAAGCTCTTATAATAATGGCTGTAGTATCTGCGACCTCTAATGGTGTAGAGGAAACTGCAGCAGAAACGACAGCGGCGAAAAAGGGATGGCTATCGAAGAGGACGCAATTTACCTATCGCTGGAAGCCTGCGTGGTTTGTTCTGAAGGAGACCCAGCTCCTGTATGGGGATAATGAAAAGGAAGACCATAAGAAAATCAACCTCGTCGGGGCGAGTATTAAGCCAGTGGAGGACAGTGGTTCGCAGTTCAGCTGGACAGTCACTCCAAAGGAGAGCAAGAGGATCTACTTCCTAAGAGCCAGCAGTgcagaagagcaggaggaatgGATGCAGGCCATCTGTACGGCCCTCATGAGCAGCTCCAGTGGACACGCCTCACACACCTGTATCATACAGTAGCACAGAGAGACACCCACTCCACAGACACGGAGCACTTTCAGATCGATAGTGGACTGGTCCCTCCCTCACGGACTGATCTCACACtttaatatatagatttgttGTTAAACTGCACGATATCTTCCAATTTCGTTTTTTTCAATCAAAAGTCTTCAGAAACATTTGTACTGaaacttaaaatgtttatatagtTGAAAATCAACtttttgtatgaaaacaaatctcagGGTAACATACAATAGTGCtgatttgtgcttttatttgtaatacttttgtatactttttaaagattaaacatccatttaaaaatgtgaaaacaccCAAAGTAATCACTCTGGGACTGTAATTCTCTGAAATCTGGAATGAACCAAGACATTTTTGAATGCTTTTTGAGAAACTCCACCACCCTGTAAACACCCCAACTGTCTGGATGGCATTTAGGACATTTACACAGAACCGTTTCATGCCTATAAATGGCCGATAATTGTactgtaacacatttaaaaagttaacaCGAGTACTAAAATAAGCTTAATGGCAAGTACAAATGCACAGTAGCCACTGTTAAAGCAGCTGTAGAAATCCCCAATCCCAAAACATAACACTCATATGCATGACATCTTTATCCATTTATACTATGTTTTTAACTACTATTATCAAATATGTTTCATTACTGGTTCAACCGATTGCTTTGCAAACTTGTTTGGACTTACATACCAGAGCTTCAGGTCCAATTATCTTGATCAGAAATGAAGTGGTGCAATAGCACCATCAGAATATATGGCCCTAGTGTAACAGTCATGTTTTTATCTgcaaatttgcattttaatatattatttttatttagtcaaACCAGACCATGACCC

Function

GO:

id name namespace
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051540 metal cluster binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003563 True 1335 mRNA 0.41 2 9774896 9777368

Neighbor

gene id symbol gene type direction distance location
AMCG00003565 NA coding downstream 15586 9747764 ~ 9759310 (-)
AMCG00003566 NA coding downstream 37033 9701702 ~ 9737863 (-)
AMCG00003564 NA coding downstream 88602 9674652 ~ 9686294 (-)
AMCG00003567 scaf8,LOC107680102,LOC107728963,LOC107571060,LOC107749595,LOC107675315 coding downstream 118422 9636471 ~ 9656474 (-)
AMCG00003560 NA coding downstream 183425 9564652 ~ 9591471 (-)
AMCG00003574 pax1,pax1a,LOC100700371,LOC102791619,LOC107737274,LOC101466677 coding upstream 331270 10108638 ~ 10115106 (-)
AMCG00003578 xrn2,LOC106571262,LOC108229358,LOC104951730 coding upstream 459381 10236749 ~ 10272767 (-)
AMCG00003577 NA coding upstream 500872 10278240 ~ 10316839 (-)
AMCG00003579 LOC107197779 coding upstream 599475 10376843 ~ 10391035 (-)
AMCG00003582 NA coding upstream 801530 10578898 ~ 10580325 (-)
G1492 NA non-coding downstream 594915 9174855 ~ 9179981 (-)
G1415 cpsf3 non-coding downstream 797047 8974810 ~ 8977849 (-)
G1405 NA non-coding downstream 810401 8957527 ~ 8964495 (-)
G1381 NA non-coding downstream 922455 8852197 ~ 8852441 (-)
G1374 NA non-coding downstream 933141 8841478 ~ 8841755 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding upstream 73323 9850691 ~ 9851427 (-)
G1631 NA non-coding upstream 74701 9852069 ~ 9852338 (-)
G1744 NA non-coding upstream 637570 10414938 ~ 10415887 (-)
G1856 NA non-coding upstream 1272783 11050151 ~ 11051078 (-)
G1935 NA non-coding upstream 1604504 11381872 ~ 11386054 (-)
AMCG00003550 NA other downstream 692046 9009117 ~ 9082850 (-)
AMCG00003484 NA other downstream 4418428 5344070 ~ 5356468 (-)
AMCG00003476 NA other downstream 4965907 4583142 ~ 4808989 (-)
AMCG00003459 NA other downstream 5879372 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 6235929 3536172 ~ 3538967 (-)
AMCG00003572 NA other upstream 75831 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 97302 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 847978 10625346 ~ 10633112 (-)
AMCG00003586 NA other upstream 1173716 10951084 ~ 10956353 (-)
AMCG00003595 myo6,LOC106571274 other upstream 1285753 11063121 ~ 11116905 (-)

Expression


Co-expression Network