AMCG00003564


Basic Information

Item Value
gene id AMCG00003564
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9674652 ~ 9686294 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003564
ATGGCAGCCGATGCCTATAACCCGGTTTCCTTGCGCAACAAGTCCAGGAAAAAAAGTCGAGGTAATGTGACAACTATGAGTCGAAGGAGGATATCGGTTAAAGAACTGGGCCACGTAGACTGCCAGGGATGGCTGTACAAGAAGAAGGAGGGCAAAGGATTTTTaggaattaaatggaaaaagttCTGGTTCGTACTAAAGAAGAGCTCGCTCTACTGGTACACCAACCAGATGgCAGACAAAGCTGAGGGCTACATCAATCTGACAGACTTCATGATAGACCGTGCCTCCGAATGCAAGAAGAAGCAtgCGATGAAGGCCACCCACCTGCAGATAATGACTTTCTACTTTGCTGCTGAAAACACAGAGGAGATGAACAAATGGTTGAATAAACTCGGACTGGCTTCAATCCAGTATGAAACGTCGGACAAAACCGAAGAGCGTTGGAGTGAAGAGAGTGACCATGAAGAAGCAGATGTCTCCAACACCCCACCTCCCCCGTATTCGGAGCAGATGATGGGTGATGTGGGCACCCTCCCTCCTCCATACTCCTCCAATCCTCCCAGCGAGGCCCCCAGCTCTCTCTGCTCCCCGGCCAGCACCATGACGTCGCAGAGCTCGGCTGTGTCCCTGGCCAAGCCTGGCGTGGAGGATCGTCAGTCCTGGCTGGACATTGTCAACAGCTCGGTATCAGAGACAGGAGAGACGCTCACCTGCTCCGCACAGGTCCACTCCCTGAACTCGCTGTCCAACAGCAGCGAAGCTGAAACGGAGGACTCTCTGGGCACTGTGTGCGACTCTCTGAACCCCGAAATCCTCACTGCATCCCGTGTGGATCTTAAGAGCAGCGAGAGAGCCTCACCTTTGACCGGATCGACCGAGGACGTTGCGGAAAGCCAGGAAGCCCCGACTGACGAAATGGAAAAGCTGTATATCCATTTGAAAGAAGCAAGCCTGTCTCCACTTGGCGAACGCAAACCGTCAACCAAAAGGGACTTTAGGAAGTCATTCATTAAACGCTGCAAAAACCAGGTTGTCAATGATAAACTGCACCTGGTCAGGACTCTGAAGAGCACTCTAAAGGCAAAGGAAGCAGACTTATTGACCATTGAGCAAGTGTTGCAAGACCCCAGTCTGACCGTGGAAAGGTACAGGAAATGGAGGGAAGCAAACCTattgctgctgcaggagatCTGTCAGCGTCCATCTTCTCAGAGTGGCAGTGAAGACCAGACTACAGAGGCTGAGCAGACGAACTCGTTTACCGAGACGGACGTCTGA

Function

GO: NA

KEGG:

id description
K23795 IPCEF1; interactor protein for cytohesin exchange factors 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003564 True 1281 mRNA 0.52 10 9674652 9686294

Neighbor

gene id symbol gene type direction distance location
AMCG00003567 scaf8,LOC107680102,LOC107728963,LOC107571060,LOC107749595,LOC107675315 coding downstream 18178 9636471 ~ 9656474 (-)
AMCG00003560 NA coding downstream 83181 9564652 ~ 9591471 (-)
AMCG00003561 NA coding downstream 119479 9543949 ~ 9555173 (-)
AMCG00003559 LOC103384102,LOC106610790 coding downstream 141075 9532915 ~ 9533577 (-)
AMCG00003555 NA coding downstream 245080 9407377 ~ 9429572 (-)
AMCG00003566 NA coding upstream 15408 9701702 ~ 9737863 (-)
AMCG00003565 NA coding upstream 61470 9747764 ~ 9759310 (-)
AMCG00003563 NA coding upstream 88602 9774896 ~ 9777368 (-)
AMCG00003574 pax1,pax1a,LOC100700371,LOC102791619,LOC107737274,LOC101466677 coding upstream 422344 10108638 ~ 10115106 (-)
AMCG00003578 xrn2,LOC106571262,LOC108229358,LOC104951730 coding upstream 550455 10236749 ~ 10272767 (-)
G1492 NA non-coding downstream 494671 9174855 ~ 9179981 (-)
G1415 cpsf3 non-coding downstream 696803 8974810 ~ 8977849 (-)
G1405 NA non-coding downstream 710157 8957527 ~ 8964495 (-)
G1381 NA non-coding downstream 822211 8852197 ~ 8852441 (-)
G1374 NA non-coding downstream 832897 8841478 ~ 8841755 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding upstream 164397 9850691 ~ 9851427 (-)
G1631 NA non-coding upstream 165775 9852069 ~ 9852338 (-)
G1744 NA non-coding upstream 728644 10414938 ~ 10415887 (-)
G1856 NA non-coding upstream 1363857 11050151 ~ 11051078 (-)
G1935 NA non-coding upstream 1695578 11381872 ~ 11386054 (-)
AMCG00003550 NA other downstream 591802 9009117 ~ 9082850 (-)
AMCG00003484 NA other downstream 4318184 5344070 ~ 5356468 (-)
AMCG00003476 NA other downstream 4865663 4583142 ~ 4808989 (-)
AMCG00003459 NA other downstream 5779128 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 6135685 3536172 ~ 3538967 (-)
AMCG00003572 NA other upstream 166905 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 188376 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 939052 10625346 ~ 10633112 (-)
AMCG00003586 NA other upstream 1264790 10951084 ~ 10956353 (-)
AMCG00003595 myo6,LOC106571274 other upstream 1376827 11063121 ~ 11116905 (-)

Expression


Co-expression Network