AMCG00003572


Basic Information

Item Value
gene id AMCG00003572
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9853199 ~ 9865649 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003572
CACAAACCAGGGCTGTTAGTACACAGACTGTGTTTAGCAGTATACGATATTATAACATgttgtgaataataatgtagcatttgttttgattatacattttttccctCCACGTCATGCTGCGGAAAACCATGAAAGTATTCATTCAGTCGCTGAAGTTACGCAGGACTTGCAAATATCTCAGTGCAACTACGAGTTTAGCAGGAACATGGAACTTCCCACAGACAAGACTTCACTCAACCCCAGCGCAGCAGAGACCCCCGACGGGCATTTCAATGCTGAAGCACCTGACATCCAAAATCAAATCAACTGGTCCTATTTCAGTGGCAGAGTACATGAGAGAGGTTCTGACCAATCCAGTTTTGGGTTATTATGTCCATAATGACATGCTAGGGGCGGAAGGAGACTTTATAACATCACCTGAAATCAGTCAGATATTTGGAGAGTTGCTGGGAATatggtgtgtgagtgagtggaTGGCTGCAGGAAAACCAAAAAACCTCCAGGTGGTAGAACTTGGTCCTGGAAGAGGTTCTCTGGCCAGCGATATCCTACGAGTGTTCAGTCAGCTGAGCTCAGTGCTGGCTGGCTCTTCTGTGACTGTCCACCTGGTCGAGGTGAGCCCCCGTCTCAGCGAGGTCCAGGCCCAGACCCTGACCGGAGACCAGCACCAGACCGCCGGCACCGAGAACGAGCCGGTGTACCGCAGAGGGACCACCAGCACGGGGCTGCCCATCTTCTGGTACCGGGGCCTAGAGGATGTTCCCAAAGGCTTCAGCCTCTTCCTTGCTCACGAGTTCTTTGACGCCCTGCCCATCCACAAATTTCAGAGAACAGAGCAGGGGTGGCGAGAAATCATGGTGGATATCGATCCTCAGGTGGATGAGAAACTGCGGTTCGTTTTAGCCCCGACTCCCACCCTGGCCTCCTCCACGCTCCTGCAGGTGGATGAACAGAGGGCGCATGTGGAAGTCTGTCCCGAGGCGGGCGTTCTTATTCAGAGGCTGACCGATCGGATTGCACGGGACGGAGGTGCGTCCCTGATAGCTGACTATGGCCATGATGGGACCAAGACGGACACCTTCAGAGGTTTCCGTGGTCACAATCTCCATGAGGTCCTGGCGGCTCCAGGCACTGCAGATCTGACGGCTGACGTGGATTTCGGTTACCTGAGGAGGATAGCGGGAGAGCAGGTGGCTTCTTTTGGTCCCGTCACACAGCAGCAGTTTTTGAAGAACATGGGCATCGATGTGAGGCTGCAGGTGCTCCTGAGGAACTGTGCTGATGCCCCAACAAGGGAGCAGCTGCTGCGTGGATACGATGTGGTGATGAACCCGGAGAAAATGGGAGAAAGGTTCAAGTTTTTTGCCTTAGTCCCTCACAGTAGACTAGCTGTGCCGTCACAGGGCACCATAGCCAAGAAGAAAGGCCCGGCGCCCCCACCTGTAGCCGGCTTCAGCCAGCTGGCACTCTGAACAGCACGACTGGACTCCCAGTTCAACACCAGACCAGGGAGATGCGCCGCTCTCTCCACCGGACTGTGGCACAGGACAAGTGCTTCAAAACCGGCTTCTGAGTGAACTTAAtctaaataaaaagtacatCATATTTATCATTTTGAATCTCTGGTTTTCAGAAAAGAAATCCTCAGCAGGGATTGTGGGTTTCTGTGAATCTGTAATGGATTCAACAGATTTGGCCTGAAAATAGTTCTCCTGCCACGTGGTACCTTCACATCTTGAAATGATTTTAGACGAATGCATAGAAAACACCTTTTGTCCATTCTAAACCATTCAAGAAgtaatttaaacatgaattacaATTCCCtaatgatatatttataaaaacatcaaaggaaactaaaatacaaaaagccaCATCAAAGGTCTACaattttttgcattattattctCTCCTAGTTGCTCCAATAAAGCTATTTCATCTCAGCCCAAAGCTGATGGGCTTACAAAGACCCTGGAACATGGAATATCCTTCTGGAAAAAGTGTCTGTAATGTTTTATCTTCACTAAGTTacttataatatattaatagcTTTAGGCTGAAAATtaactaaatatgtataatttaaggcATATGTTTCCAGAACTACCAACTTTGTTTAATGTCCAATTCTCCCAGATTGCAGACTGTTCATTCCGGGTTAATTATTCTGCTGTtggtaaatataaatgttaggTTATTCCATACAGCTGCTGAATAAGTTGGCAACAAACCAATGTGTTTGACACGTGATGACTATAATACAGGATTTAGGACTCCCAGAATCCCAAGAGATGTGGTGCCCGCTACTTTTTCATGAATTTGTCCTGGGGCAAGATCGAAACGTGGCTGTGGTTCACAAGAAAACTTTCAGACAGTCACACCAGCAATTATATCGGCAGCGTTGGCAGTCGGCCAAAGCAACTGTGCCAACTTTCCTACTtcccttttttttgtaaacctGCTCGTAAATGCTTACCTTGCTTTTTCTCCATCTGTGCACccatttgcttttgtatttaatcGGGCTTTAGCTGTATTAGTGCTTGAGCGTTCCCCATTGCACACGGGGCAGATCTGAAATGCAGAACCGAAACTCTGCGGGG
>TU1930
CAACTTTCCTACTtcccttttttttgtaaacctGCTCGTAAATGCTTACCTTGCTTTTTCTCCATCTGTGCACccatttgcttttgtatttaatcGGGCTTTAGCTGTATTAGTGCTTGAGCGTTCCCCATTGCACACGGGGCAGATCTGAAATGCAGAACCGAAACTCTGCGGGGGGGGGGATTAATATCGCGCAGAAGGAACTCGTCGGGTTCAGCCAGCCACGCTTGAATTATTGAAGAAgggaaagaaaccaaacaaaagaaaacaccagCAGCGGGAACCTGACTTCCTCACTTGCTGCAGAGGCTTCTAGTTTACACAAGGGTCACGACATGAACTGTGTGCGCTGATTCAGTGTGAGGTGTCCTGCTGCCGTGCAACGCAAGTGTCTGTCGGGGCGACTGTAGTCTGCGCTTTGATGCAAAAGGTGTGAACAACATGGCTTTGATGTTCAGTCATCGGACGTTCCAAACAGACCGCTGTCTTTGCGTACAGAAGACCAGCGCAGACAGGTATCAGAGTGGGAGTTTTAAAATGAACGTCCTATTTTACAGAAGGGGGGGGTATCTACTCAGACCAGCTCTATTGCAAGCTGTCTTTTACTTGAAGCACGTGTGGCGTTTCTCACCCGGACTCACTGTATTATACAGAACAAAACGTCTCCAAATCCTCCACCTCTCTTGGCAACAGTATAGAACCACAATGGAATCCTAAGGGAATGTTAAAATGCTGAGTTTTATTCATCTGTAATtactaaaatatacaaaacacttTGAAGACACCTGCCAAGCCAGTGGCAACACAAGATTAAATGATTCTCAGGATAAAAAGTCACCGTGTCTCATTACCTTTTTTCCAGAAAAGCCAGGCTGAAGTTGTGCATAATTTCAGAGACCCTACACACAGAACTGAGCTACATGTCCATTCAGCAGCTTCGCCGAGCAGCCCtttacattgcaaaaataaCTTAAGTGAAAAAAGCACTTTGTGTGACACTGAAcagaaaatataactttttttctttcacatgcaCTGAAAGAGGCCTGCGACATCATTTGGTTTTAACCggtttgttttgtatgaaatGAGAATTTAAGCTCTGCCTTTGTACTGCTAACACCACTGATTATAAGCCCCTGTATACATTGTCCCACATTGCACAggacattaaaatgaattggtTAGTTTTAATTATCCACACCTCATTTATCCCCTGCCGGAGAGAAGTGCACCAACTGGCAACAGGACTGGTATGTTTGTGCTAAAATGAAGTTGTGCTGCCGGTGATGTGTAATTTTTGAGCAAACTATTTTATTCCAAAATGAAAACTTATTATTTAGAAGAGGGCGTGTGACTTTCAGAACTTAGCTCTGTTCAAAGTAGAACGATTACAGTCATTGATCAGAATAAGTCTAGGAGGATGTCTATGTTCTAATAACAGACACCTGTGACTCATAGCATAGCAAGATCAGGCTCAATGGACGGGTGATCTCCTTATCTACAGCTGCAATTCAGGAAACAATGTTATTAGATATTGATtctaaagcaaaacacacaacctgccCGAACCGTTCATGAAAAATTTAGCCTTTTGGTTTTCTCTGGGCTGAATCAGTCTTTAACACATTCTGGAtagcattatttaaaaagcatagtTAAAGGAACAATGTTAATGGACTTCAGCATTAGTTAACGGGGGTGAATGCTTTAGATCAGGGAGAGCCACACTCCTGCACGTTTTCCTGCTCTCTCTCAATCACAAAtcactggataccttgaacacattACAACTGTCTCAATTAAGCCGTTAACAATCTAGGACCCCTGCTTTATATAAATAGTAagaaacagtgttttaattaaaagtgggAAAGTATTGTTTTCCTCCCCCTGGCATTGTTAAAAGTGGATCAAGGCGTTGGCATAACTGACAGGCCTGTACTTTGCTATTTATATGCCCATGCTTAAAggtaaaacaaaccaaaaacacaagtAAACATTTAGGCCATAAAGTCAACTAATCAGCCAAATGTTATATCTTTAATGAagtatagaaagaaaaaaattcaAAGGCCACATATCAGTTTCCTAAAATTGCACTTCTGAAGGAAAGGGAAAGTGAGAGCTGGCTGCACATTTGAACATTGAGAACAGAGCGACATACAACAGACTAGTGGGCTGAGAGGCACAGACTGAGTCACTGCACTGCGGGGTACTTTCCAGTATTCCAGTGCACAAACGTGCCATACCTTTGCCGTACTTAAGTGACAGTATTGGATACAGAAATTAAACCAGAACACGAGATATAAAACTGCAAAGCACGTTTCCACAGAGCACACAGTTTTGTAATACGTTTTGTCGTAAGCGAAGAGCAAgtctgtgtgcttttgttcggcaaaaaaaataaaatgctgcatttCATCGCCTACTGCATCGTCCTTAATTTCATCTTGATTGAATATCATACATTGTAGCATCTTGGTGTAGATCTGTCCTCCTCCGTTTAAGACCTTGTGTTTTACAGTCGGTTAATGTGGTCTTTATGCCGTAGCTTATTTGAAAAATGATCCCAACGGCACTGCTGAGATGTGCGTCGTCCTCATCAATACCAGCGTCACAGCAGCTCTTGTTTTTCAGGAGCAGGAATGTCAGTGGTACAGTATAATCAGAGACATGAGGTTAAACAACAGGAATGTAAGGAAAGAGGAATGAACACAAGTCTTTAAAAAGTTCAGTCACTAGtgatgcaataataataataataataataataataataaaaaataataaaaaataaacaatttctcaACCTCTAAATAACAATTTTCATGATGGGTCCAACAATGCAGCTTTTGCAACTCCCAGAATGAATGGCTTAAACATGCCATAGACATTTCTCATAACATCGGGAAATCTAATTCCCTCCattgaatatgaataattttcATGAGACATGCAATACTCAGTTATCTTCTCCCGCTTGCAGTCAGAAAGCAGTGCCTATTGTGCTATTTGCAGTCAACATATTTCAAGCAATGTTAAGAATGAACTtccataataaataaagcatggCGTGAAGCCTCGACACTAAAAGACCAGCGATcccttttgtgttgtttgctgtTGATTCTGATGCCTTTGGTGGGACTGAGTACAGGGGGACTGTAATGACTTCGTATTGATGTAGCAGCTGTTCAGAATAGATTTCATTTTCCTTAAGGGTCAATCAATGACAAGAACAAAACGTTGACCTCTAGTGCAAAAATGTTCTAACCCCAAATCAATGCACAACATATTCAAGACGAGCATAATGTGATGAGTTCCAGTTTAATACCTTCAAATGAAACCATCTGAAGTTTTTTCTCTAAAATAGCACTCTTAACTTGAGCTTAACTCTTGGAATCTGGTTATGAAGATTCTTTTAGAGATCTTTTCagattctataaaaaaaaaaaggaaagtaggAATAACCTAGCGCTCTTTCTCTTCCGTTTGGTCCACGCTGCAGCCCTTTTCTGGTTTGTGTTTGCATGGGAGGTTTATTCTGAGAGTCCTTTTCTAATGTAAAACCAAGATCAACAGACCTGCAATTTTATGGCTTATAAGAAggcaaggttaaaaaaaaaaaaaaaaaaaagctataaaaAGAGATTCTCATCATAAATCAGGAATATTTCAAACTATAAAAACCTGAAGTCCACGTCACCTCTAGGCTTCACATACACCTCGGTTAAACACCACAAAACGCACCTTCAAGGCACAGTCTGCCATTTCACACAGCGGACCTCTACAGTCCACACCCCCACACATCTCCCATGTTCCGTCTCCCCGGACTGCTCCACCAGAGTCCGACGACGAGCCGTGCCAGATCATCTCGGGTCTCGTGAACAGTTCCCAGGTCTCTTAACTGGCAGGCAGTCTGCCTCTACAAGTCCTCCATCCAGGCCATGGCGCCGCTACGGATCCTCCTCCATGTCGTCCAGGTTGGGCGCCATGATGAAATGTTTTGGATAAGCCAGGTTGTGCGCGTCGGCGTACTCCTCCCAGCGCGCGTCGTCACTCTCGTGGGTGATGTAGCGCTCCCC

Function

GO: NA

KEGG:

id description
ko00900 Terpenoid backbone biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003572 False 2603 mRNA 0.47 10 9857111 9865649
TU1930 True 4088 lncRNA 0.51 1 9853199 9857286

Neighbor

gene id symbol gene type direction distance location
AMCG00003563 NA coding downstream 75831 9774896 ~ 9777368 (-)
AMCG00003565 NA coding downstream 93889 9747764 ~ 9759310 (-)
AMCG00003566 NA coding downstream 115336 9701702 ~ 9737863 (-)
AMCG00003564 NA coding downstream 166905 9674652 ~ 9686294 (-)
AMCG00003567 scaf8,LOC107680102,LOC107728963,LOC107571060,LOC107749595,LOC107675315 coding downstream 196725 9636471 ~ 9656474 (-)
AMCG00003574 pax1,pax1a,LOC100700371,LOC102791619,LOC107737274,LOC101466677 coding upstream 242989 10108638 ~ 10115106 (-)
AMCG00003578 xrn2,LOC106571262,LOC108229358,LOC104951730 coding upstream 371100 10236749 ~ 10272767 (-)
AMCG00003577 NA coding upstream 412591 10278240 ~ 10316839 (-)
AMCG00003579 LOC107197779 coding upstream 511194 10376843 ~ 10391035 (-)
AMCG00003582 NA coding upstream 713249 10578898 ~ 10580325 (-)
G1631 NA non-coding downstream 861 9852069 ~ 9852338 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding downstream 1772 9850691 ~ 9851427 (-)
G1492 NA non-coding downstream 673218 9174855 ~ 9179981 (-)
G1415 cpsf3 non-coding downstream 875350 8974810 ~ 8977849 (-)
G1405 NA non-coding downstream 888704 8957527 ~ 8964495 (-)
G1744 NA non-coding upstream 549289 10414938 ~ 10415887 (-)
G1856 NA non-coding upstream 1184502 11050151 ~ 11051078 (-)
G1935 NA non-coding upstream 1516223 11381872 ~ 11386054 (-)
G2044 NA non-coding upstream 1867155 11732804 ~ 11863101 (-)
G2052 LOC100846954 non-coding upstream 1993272 11858921 ~ 11905671 (-)
AMCG00003550 NA other downstream 770349 9009117 ~ 9082850 (-)
AMCG00003484 NA other downstream 4496731 5344070 ~ 5356468 (-)
AMCG00003476 NA other downstream 5044210 4583142 ~ 4808989 (-)
AMCG00003459 NA other downstream 5957675 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 6314232 3536172 ~ 3538967 (-)
AMCG00003573 NA other upstream 9021 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 759697 10625346 ~ 10633112 (-)
AMCG00003586 NA other upstream 1085435 10951084 ~ 10956353 (-)
AMCG00003595 myo6,LOC106571274 other upstream 1197472 11063121 ~ 11116905 (-)
AMCG00003618 NA other upstream 1878340 11743989 ~ 11789275 (-)

Expression


Co-expression Network