AMCG00003577


Basic Information

Item Value
gene id AMCG00003577
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10278240 ~ 10316839 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003577
CGTGGCTGGGTTGTTTACGCGCGGGGCATGCTGGGAGCCGGTGCGTATGACAACCGGCGTAAACACAGCAGAGCGGCGCTGCGTCGGGAAGAGCTGTTGAACTCATGGCTTTCTACGAAACAGACTACTTGGAGAAGATCGGAACAATTCAGCAGCGTCTACACGAAAGTGAGAAAAAGAGGctggagctggagagagagctgGCTGCTTACTGCAGGTCTGACAAGAGAGTggcccagattaaaaatgcaaaactgtgcAGTTATCTGAAGGAGATATCTGAAAGAGAGCAACAAGCTAAGATTAGAAACTTTGAGTTTCTGAAAGACATTCAACGTATTGAAATGCATACAGAGGTGCTGGCTCCTTACTCCAGCACCCTACATCAGAAAAAGGAAAAGAAGCTACCAGGACCATCGCCCAATAGTCCCACTGTACATCTCACCAAAGGACTATACCAGCCTGCTACCATCTTTATGGGACGTGAAACCTCAAGTGAAATTCCTGCAATTATGCCATCCTTCCAACCTATACACAGCCTATCGAATCAGCATCTACCTTCTTCCCAGCACGTGGATCATAAAATGTTAAGCAAGTTGAAATTCACAGCACATGGAGCTGTAACATTGGCATGTCACGTAGAAGACCAAACCTACCCCAATGATTACACGAACAGAAGTTCACCTGGGAAAAGGGGAAGACTTGTCCCACCTCCATCAAGCAACCCACAATTACTAAAAGATTCAATCCCACTACAAATTAGTGATTTAACTGAGTCTCACGTTATTCATGTTCCTGAGGAAGGGGTGCTGCCCCAACACAGTGCCCAGCTCAATGAAAGGAAGTCTCCAGGTCCACAAAGCACTGATCTGAACATCTCTGCTAATGTGGAGATCGTGAAAGGATGTTACCCTGATGCTGGTGAAGCTGTGCCTCTCATGGCCCTTCCTGGATCTAGAAATGAAAGTCAGAATAATGCAGaggGGGGCATGAGTACTATTGCTATTTCTAGATTGACTCTGCCAAATGTGGAAAATGACATCGCCGACACAGAAAGTGACTTCTCGATATCTCTGAGTGAAGATGAAGAGTGTTCAGTTTCACCTGAAGATGGGGGAGACACGGGCCTTTCTGCAGATAAGAACGATGCAGTGAGAAGACCCGAGCTCTCCATCACCAAGATAGAGAGATTAATAGTGCACAAGAGGGGAAGGGCAGGCACTCCGGTGCAGTCTTCGCAAAGCAGGTCACCCTTCACAACCCCTGCAGAAAACCTTTTACTTGAGGGATTTGTACATTTACTGAAGAGCATAGAAGGGAGACTGCATCAAGGAGAGAACTGCTTACAGCTCTATAAGACATCATCAGTTACTAAGGAGAAGCGTGATCATTTGATAAGCCTTTGTCACCGCAAGGCGCGCTTGAATGAAGAGGACCTTGAAGCATGTGGAGCAGTCGTCCTTCATCAGCTTCAGAGGTTGTCATGGAGCATGTCAAAGGGATGCTTATTACCCGAAGAGATAGTGAGCAGTGACTGGACCACTATAGATGAAGGCAAAATAAGGTCCTGTCTATCTCCAGATTCTGCAATGTTGTGGGAGTATTGGTACAAACATGTGGTTATTTTGGGTGACTGCCATGTCTTATCCACAGATGAGATAGCTGAGATTTTCACACCATTATTGGTGGCTGAAAACTGTTCAGATATCAACAAGGCCAAAGCGTTACTGAAGACACTTCTTCCACAAGCATCTGAAGGAAGCCTTTCTGTTCAAAGTAATGAATCATCTTGCAGTTTGCCATCAATCCTCAATGACAGTGGTGAAATAAAACCAGCAAAACCTGCTCAATGGTCCTACAGTACTGCCATAGGGAAACAGGGGCCGCAAAGTGGTGAAGAGGACAGCAAAGAGGAGAGCTTGTTGGAAAGTATTCCTATTAGAGAGACTAAAGCATACCAGCTGCTTAAACAATCAGCCGTGCAGCAGAGAAGACCAGACTCTGATGAGGAAGATGAGGTCTCTGATTTGGAGCTGTCAGtactgacaaatgaaaaacacattgacaCAGTCAAGAACGAAGAAGTCCTTGAATCAGAAACGTCTTCTGCTAGTCACAAACGTCCTCACTTTCGGAAGGAGGACAAGAAGAAAACCATATCTACTGTAAAATCCAAGGCTTTCTGGGGTGAATCAGATGACAGCAATACTGACATTGAAGCTGTTTTGTGCCCTCAAACTCACAGTACAAATAATGATGACTTTGATGATTTTTATGACTGATTCTGCTGTCTCCTTGGAAGACATGGGTTAATACGATGCATTAATCACAAATTAATGTGTAATTCGATTAGCAGTGTAATAAATTCTGTATCTGCCACACATTTCcgtgtcatttgttttgtttgttttaatggaag

Function

GO: NA

KEGG:

id description
K16539 PLK1S1; centrosomal protein kizuna

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003577 True 2419 mRNA 0.45 14 10278240 10316839

Neighbor

gene id symbol gene type direction distance location
AMCG00003578 xrn2,LOC106571262,LOC108229358,LOC104951730 coding downstream 5473 10236749 ~ 10272767 (-)
AMCG00003574 pax1,pax1a,LOC100700371,LOC102791619,LOC107737274,LOC101466677 coding downstream 163134 10108638 ~ 10115106 (-)
AMCG00003563 NA coding downstream 500872 9774896 ~ 9777368 (-)
AMCG00003565 NA coding downstream 518930 9747764 ~ 9759310 (-)
AMCG00003566 NA coding downstream 540377 9701702 ~ 9737863 (-)
AMCG00003579 LOC107197779 coding upstream 60004 10376843 ~ 10391035 (-)
AMCG00003582 NA coding upstream 262059 10578898 ~ 10580325 (-)
AMCG00003584 NA coding upstream 267821 10584660 ~ 10616997 (-)
AMCG00003589 col12a1,col12a1a,LOC108428624 coding upstream 554502 10871341 ~ 10944875 (-)
AMCG00003588 tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC107714749,LOC108257743,LOC107664818 coding upstream 640570 10957409 ~ 10963201 (-)
G1631 NA non-coding downstream 425902 9852069 ~ 9852338 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding downstream 426813 9850691 ~ 9851427 (-)
G1492 NA non-coding downstream 1098259 9174855 ~ 9179981 (-)
G1415 cpsf3 non-coding downstream 1300391 8974810 ~ 8977849 (-)
G1405 NA non-coding downstream 1313745 8957527 ~ 8964495 (-)
G1744 NA non-coding upstream 98099 10414938 ~ 10415887 (-)
G1856 NA non-coding upstream 733312 11050151 ~ 11051078 (-)
G1935 NA non-coding upstream 1065033 11381872 ~ 11386054 (-)
G2044 NA non-coding upstream 1415965 11732804 ~ 11863101 (-)
G2052 LOC100846954 non-coding upstream 1542082 11858921 ~ 11905671 (-)
AMCG00003573 NA other downstream 399796 9874670 ~ 9878444 (-)
AMCG00003572 NA other downstream 412591 9853199 ~ 9865649 (-)
AMCG00003550 NA other downstream 1195390 9009117 ~ 9082850 (-)
AMCG00003484 NA other downstream 4921772 5344070 ~ 5356468 (-)
AMCG00003476 NA other downstream 5469251 4583142 ~ 4808989 (-)
AMCG00003587 naa20 other upstream 308507 10625346 ~ 10633112 (-)
AMCG00003586 NA other upstream 634245 10951084 ~ 10956353 (-)
AMCG00003595 myo6,LOC106571274 other upstream 746282 11063121 ~ 11116905 (-)
AMCG00003618 NA other upstream 1427150 11743989 ~ 11789275 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other upstream 1605152 11921991 ~ 11939783 (-)

Expression


Co-expression Network