AMCG00003579 (LOC107197779)


Basic Information

Item Value
gene id AMCG00003579
gene name LOC107197779
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10376843 ~ 10391035 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003579
ATGCCTGTGATGTCGTTGCTAATGGCTTTCCACATCCAGAGTGACGGAGAGAGTGGGAAGCCGTGGAGATGCCGAACTGCAGGGGGAGAGGACAGCCTGGCTTGTCTTGACAGCCTCGGAAAGGTGCAGGATGGACCCTCTCCCATTTCAGTTTATGCATTGCGTCTTGGGCCTGGGGAGGACCTACTGAGCTCTCTGGTCACTTTTGTGGAGGAGAAGAAGCTGAAAGCCCCATTTATCATCACTTGTGTGGGCAGCATCACCAAGGCAACGCTCAGGCTGGCAAATGCCACTGCTTCGAATACTAATGAGATAATCCATCTGAATGAAAGATTTGAAATTGTTTCCCTGGTTGGCACCTTAAATAAAGAAGCTCACCTGCATATCTGTTTGGCTGATAAAGATGGCAAAACTGTAGGAGGACACATTATGGGTGACTTGGAAGTGTTCACTACTGCTGAAATAATCATTGGCGAGGCGAGCAATCTGCAGTTTACCCGAGAGATGGATGAACGCACCGGTTTCCCAGAACTTGTCATTAGCTCTCACTCTAAACCGGCCTAGCAATTTACACTCTGTAGATTATAGCCccctgttttttctctctcttcttttatataaaaaagtgcATTGAATAAATTGGGATGGAGCATGCCTTCTCCGCtcattgcatttctttattgattCAGGCACTTTGATCGAGCAGAGCCTAATCAATTCTTCAGTGAGAAGACGGG

Function

NR:

description
uncharacterized protein LOC107197779

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003579 True 737 mRNA 0.47 4 10376843 10391035

Neighbor

gene id symbol gene type direction distance location
AMCG00003577 NA coding downstream 60004 10278240 ~ 10316839 (-)
AMCG00003578 xrn2,LOC106571262,LOC108229358,LOC104951730 coding downstream 104076 10236749 ~ 10272767 (-)
AMCG00003574 pax1,pax1a,LOC100700371,LOC102791619,LOC107737274,LOC101466677 coding downstream 261737 10108638 ~ 10115106 (-)
AMCG00003563 NA coding downstream 599475 9774896 ~ 9777368 (-)
AMCG00003565 NA coding downstream 617533 9747764 ~ 9759310 (-)
AMCG00003582 NA coding upstream 187863 10578898 ~ 10580325 (-)
AMCG00003584 NA coding upstream 193625 10584660 ~ 10616997 (-)
AMCG00003589 col12a1,col12a1a,LOC108428624 coding upstream 480306 10871341 ~ 10944875 (-)
AMCG00003588 tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC107714749,LOC108257743,LOC107664818 coding upstream 566374 10957409 ~ 10963201 (-)
AMCG00003592 NA coding upstream 579329 10970364 ~ 10996825 (-)
G1631 NA non-coding downstream 524505 9852069 ~ 9852338 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding downstream 525416 9850691 ~ 9851427 (-)
G1492 NA non-coding downstream 1196862 9174855 ~ 9179981 (-)
G1415 cpsf3 non-coding downstream 1398994 8974810 ~ 8977849 (-)
G1405 NA non-coding downstream 1412348 8957527 ~ 8964495 (-)
G1744 NA non-coding upstream 23903 10414938 ~ 10415887 (-)
G1856 NA non-coding upstream 659116 11050151 ~ 11051078 (-)
G1935 NA non-coding upstream 990837 11381872 ~ 11386054 (-)
G2044 NA non-coding upstream 1341769 11732804 ~ 11863101 (-)
G2052 LOC100846954 non-coding upstream 1467886 11858921 ~ 11905671 (-)
AMCG00003573 NA other downstream 498399 9874670 ~ 9878444 (-)
AMCG00003572 NA other downstream 511194 9853199 ~ 9865649 (-)
AMCG00003550 NA other downstream 1293993 9009117 ~ 9082850 (-)
AMCG00003484 NA other downstream 5020375 5344070 ~ 5356468 (-)
AMCG00003476 NA other downstream 5567854 4583142 ~ 4808989 (-)
AMCG00003587 naa20 other upstream 234311 10625346 ~ 10633112 (-)
AMCG00003586 NA other upstream 560049 10951084 ~ 10956353 (-)
AMCG00003595 myo6,LOC106571274 other upstream 672086 11063121 ~ 11116905 (-)
AMCG00003618 NA other upstream 1352954 11743989 ~ 11789275 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other upstream 1530956 11921991 ~ 11939783 (-)

Expression


Co-expression Network