AMCG00003587 (naa20)


Basic Information

Item Value
gene id AMCG00003587
gene name naa20
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10625346 ~ 10633112 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003587
CAGACTTCATTTCATTACAGGGTGGAACAATGTGGCTTTTCTAATCCACCGCTAAAGGTGgtaaaccttaaaaaaataagcaaacataattttaaattggtCTTTGAGATGCGACTGGTATTTTAttcaagttttacattttttaagcagTACATGAATTTGATAAACAAACGTATTgcttacaaaatacatttcgtagtatcgtaaaaaaaaaaaaatcggtcTTTCCAAACTTGTTTAGCAACCGCATTTCGGAtcacaatacaatgcaaatgaTATGAAGTTGTGTACATCCTGTGTGTACTACAAATGTATGatcaattatgaaaaaaatacacaattagcTTATAGTGTGCATAATTCAGACAATAtattttggttaaaataaaaaatatttcaaagaataatatattttacaacagcACTATTGTGATACATTCAAAGTCTTGCAAAATTATACTAACAAAATTAATGGTATTTATTCACCCTTGGGGaagaggacatttttttttgcaaagctTATAGTGGATGTTTGAGAGACTTGAGGACACAAACTGCACAGAATGACCTCCCCAGAATGTAGCTGACACTAAACTGGTACAATCTAACCTTCAGGGCTTTGCCAAATACTTTGGACATTCACAGAAATACCTGTATGTGCAGTTCAATATTACACAAACCGTAAATGCTACATGTGCAGAATAGAGAAGAGTTAAAACATCAAGTCTCCTTCCAAGTTCACAGTAATGATGAGGTGGGAACAAAACTACTGAATTCCTGAGTTGTGACAGCAGGTGGTGctgttttgcatttccatttgtaatatacatctatatctacATGTGCATTGAGTCGGGCTGTcagaagctgtttttctttctctgaaattacacatttcaattgAATTCAAACAAGGGTTTCACCTTGAACATTAATTATACAACTTGAAAAACACAGTCAGGTTCTGGTACTGGTAATGATGctggtaaacattttaaagtcttGGCTGCACAAATGCATGTACACTTTTACACAGTACTCAGCTGTACAGCCCCCATAATTTTTCCTGCTTATATCCTCTCTCATCCTTTGAGGAAAGCATACATTGACCATACATATTCAGAACTGAATATTACATCAACAAAAAAGGTATTGCAATGGATTGTTCAATATCTGAACTCAAAAAGACTCACAATACCCTGGTGAGCGCATCAGTATTCTGTATCAATATGTGCAATCTGAGCAATATCTTTTCAGTCATATAACATTTTGCAGAGCAGTAAGAAAATTGATAAAAGACTGCTTACTAGCTGGTAGTTAACATACATGTAGTGTATTTTCATAGAATTTCAGCACCCGCTCTTTCAACtaccaaacaaaatgtaagcTTATACATCAACATATatcaaataagtaaaaataataatacaaaaaattaatGTAACTGAATCAGACAAAATTGTCAGTTTTCATGAATGTGGATTTCTTACTGAAAGTCTTATTAGATGCTCTCTAAAGAATACAAGTGTGCTTCTTAACCCACTGATTATTTTCACAGTCTCtcaacacattttaacacataCATTTCTGAAGCCGACTCCGTGGCAGGGCACTTTTACATATGCAGATCCTTTAGGAATTTGAACATTCCTGCTTAATCTGAAGACCTAGCTCTGCAGCACCAGCCTCCTCTGCCAGGTCTGTGACTGGCGTCTCGCTGCCGTCTGCAGGGAGTGTCAGCTCTTTCATTGCACTGCGCACAAACAGCAGCGCGTCCAAAGCATCCGCATCCAGAGAGGCCCGTTGGTCCAGTAAAGCCCTATCCGCCGTGGAGAAGACTCTTCCGGACGGGACGCAAGTCGCTGGAATGCACAGGAACTTCCGTGCCACTTTAGCCAGAGTTGGAAAGCTGGAAGCGTTCTCTGCCCACCAGCTAATGGGATTAACGGCAGTGGGCACAGCCTTGCCAGTGACATACTGCTGGACTTCATCTGCAGGAGTGCAGGACGAATTAGTGGCACTGCCCTCCTGGTAATACTTCCCAAGAAGGAATGCCATGTCCGACTCCATGTTTTCCGACCTGCTCCGTTTGGCAGAAGGCTGCACGCTCTTCTGTGTTCCTGAATGGCGTTCAGCCTGTATGAGAGAGATGACTTCTGCTTGGACAGCACTGCGCTGCGTTGGCTTAAGGAACAGGAGAGACTTGTACCTGGGATCCAGGAAAGAGCAGATCAATGCTGGGTCTTTGCACCAGTTGTCCATGCTGTAGCACCTGTCTAAAATAGATGTCACTATTCTCTTAAACTCAGCCACGGCTTCTATGTCAGCTTTGTACACCCGAAGGTGTTGGCTTCTTAAGCTGCAGAGTATGGGGTAAACCCCACTGAGACCCGGGTACTCCTCTGAACACATGATGCGTGTGGCCACGTACAGGGGCCGAAGCACAGGAACCATGGCCTGCATCACACTCCACTGGCTGTCAGAGAGTTCATACATGGTGGTTTCGGAGGGGCTGACCACTTCCGCGTGATGGAGCGCTTCATATATACTCAGGCGATGCTGCAGCAGACACTCGAACATATCAAAGGTTGTGTACCAGTGGGAAGCACAATCGCTGACCAGCTCCGTCTGGGGTAAATCTGCCTTCAGCTGCGGCTGGAGCTCCAGGCTGGCCAGAACGGACTGGTTGAAATGGCCAACTAGTGCCTTTGCAGCAGATATGGTATCGGACAAGACCCCGACTTCATCAAATGCACAACGGATGGCCAGTTGCAGCGTCTGGCCAAAGCATTTAAAGTGACGCCAACCGAAAGTGTTGGCACAGTTCGCCATATTCGCCTCGTTTTCTGTCACAAACCCATacactttgtttttcatgaCCTCAAACTCAGTGAATAGTCTGTTGATTTCTACTGTTATACTATGACTGGGAAGATGTCCTTGTACTTTCCTTGTCCCCAGTACGAAGTGATTCAGTTGCCATTTTTTATCCAAGAAAtgtacagtcagtgtgaagtATTCCTCGGCGGAGAGAGTGGACCACAGATCCACGGTGACCCCCATGCCCACTTCATTGGCCAACTTCTCCTTCAGTGCGTGTTTTTCTGCTTCATAGTGCAAATTCAGGCAGCGTTGCAGCTCCTTCTTCCCGGGGATCTCGTAGATCGGGTTGATTTCTTGAATGAATGCCTTGAACCCCATCCCCTCCACAATACTGGGCGGATGTAGGTCCATAGCGCACATTGCAACCAGCTTTTCCATGCGTTTTTCCCGGTCGTTTTTCTCCGCCGGATCAGTACTGTCCTGGTTATTTTTTTGGTAGGCTAATCGGCAAGCTCGAACTATTCTGCACCGTCGGGTGTTAGAAATAAAGATCTCACTGTGTTTAAACCGGAGATGGTTGTACATCGACCCAGTGCTGCCTCCGACATAGGCGAGCTGCGAAGAGCACAGACTGCAGGACACTTTATTCTTCCCTTGATTCTCCACTATCTTGAAAAACTTCCAAACTTCGGATCGCCGAGACCTTTCGTCTGCCATTCTGCTACCACGGgtttaaagttaaaatgttcTTATCTAACGTGTACAATTGTGCAGATCCCGACTCTCCTGCTTCCCCCGGAGGTTTGCACCGTAACCGAACCGCCCCCACACGGACAAAGACAGCCGAGAACACACGCTTCCATCCGAACAACATCAACAGTGGCGGCGGAAGTTCCGCCCCCATTCGAGGGTCAAAGTGCGTAGGTCGTTCGCGTCACTTCCGTTTCGCCATCAACAGCAGGAGAATGACGACGCTGAGGGCTTTTAACTGCGACGATCTGTTTAAATTCAACAACATTAACCTGGACCCACTCACAGAAACTTACCTGGCTCACTGGCCTGAGTACTTCATTGTTGCTGAGGCGCCGGGAGGAGAGCTAATGGGTTATAtcatGGGTAAAGCTGAAGGCTCAGTGGCCCGGGAGGAATGGCACGGCCACGTCACGGCCCTGTCTGTGGCCCCAGAGTTCAGGCGGCTGGGACTAGCAGCCAAGCTCATGGAATTGCTGGAAGAAATCTCGGAGAGGAAAGGAGGATTCTTTGTGGATTTGTTTGTGCGCGTTTCCAACCAGGTGGCAGTGAACATGTATAAGCAGCTGGGTTACAGTGTCTATAGGACAGTCATAGAGTACTACTCTGCCAGCAATGGGGAACCAGATGAAGACGCTTATGATATGAGGAAAGCCCTGtccagagacacagagaagaaGTCCATTATTCCCCTACCACATCCTGTGAGACCAGAAGATATCGAATAACTATAGGCTGTGGTTCTCAGGCAGCTCAGTCCCTTCTGAACCATTCAGATGTTAATTCAAACCACAACAAACGTAATGAAAAATATCCTAGAAATTGAAAATCGCTATTAATTTCTGGCAGGTtttcaaatctaaaaaacacactggctttaacaattaaaagataaaaggtgtcctttttgtttttttcagatttactaGCCATAAAGTATGATTTTCAGAGAAGGTGGACACAAAGTTGTCTCAAAGAAAGACAATTAGATTTAGTAacgttttaaaaacatgaaaacaggaAGTCcagtaattaaaatcaaaaggtAGCTACACGTTCAATGCAAATAATAGTgccatacaaaaaaataaaaacaatagaatCTATTAAattggattaaaataaaaaataagccaaatgtgtgcatttgtaaaaGATGGGACAGATAATTGCTGCAGCTGTATGATTACATTAGGGATTGCATTTGTTTGAGACCCACAGCTTTACTGcgaattatttattgtttttttttgtagaagaTTGTGAAATATGCACAATGAGATGTAAATTAAAAGGTTACATCAAGCTataggaataaatacattatatccACAATGTATAGTATCTTTTCATCATTGCACATTGTGGTAAATAGTTACAGATCGTATTCACAAAATCTAAACTGTTTTCTCAATATGTACCATAGTGGAACCTTAGGGGAAAACACTCTCACTtttgatgtttcattttctaCATTGGAGAAATCCACACaactttttaaagttaattgtttcaCTGACATCAGGCTGATGTTGTCAGTATGGCTAATGGAGCTGGTCTGTTATTATTGATCTTGTATCACACTGCATTTACACAGATGTAATCATTGCCAATTTAATTGAAGTTCATTGATGTAGTGTCACTACAGTGGTGAAGAAGATGGAGTCACACGTTTTCTGAAAGCATTTACTTTGAATGAATCATAACTAGAGCCTGactgatacaggttttttgggtccgatactGATAACTGGGAAGCTAAATTTCCcgattaccgatatatctgctgatatttactttttttgttagc
>TU2119
ACTACAGTGGTGAAGAAGATGGAGTCACACGTTTTCTGAAAGCATTTACTTTGAATGAATCATAACTAGAGCCTGactgatacaggttttttgggtccgatactGATAACTGGGAAGCTAAATTTCCcgattaccgatatatctgctgatatttactttttttgttagcaagcaaaacacattttctagcatggatccctcaaatctctccctgtctgagagaaattgtcaaatatgcactgaaggcaggatttttatgtttttacattttacataataaacttaacattaattttcatcataaataacaaccacaaatcaaacattgtaaaaataaatacaatagaataAGGTAGaatacaggaaaaatataaaaatatgcatgttctatacattagaacaaagccCAAGGCATAAGAGCAGTTTCacacagaaatggaaaaatatgcaTGAGCAAATAATATGATAGTGTTGGTCTGGTCTGGTCTGTTGGAAGTGCTGGTCTGGCTTATATTTCTCAGAGCTCAACACTGCCCATCACACAGGGGCAGGTTATTACCGTGCAGgcagcccagcacagctgcgtttgttttaaagaaaagtatttaaaaatgcccttgaaagtgtaacttatttaatacgtatattaaatgtattgcaatacgaatcacagccaaaacacgatgtagg

Function

symbol description
naa20 Predicted to enable peptide alpha-N-acetyltransferase activity. Predicted to be involved in N-terminal peptidyl-methionine acetylation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of NatB complex. Orthologous to human NAA20 (N-alpha-acetyltransferase 20, NatB catalytic subunit).

NR:

description
N-alpha-acetyltransferase 20

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004596 peptide alpha-N-acetyltransferase activity molecular_function

KEGG:

id description
K17972 NAA20, NAT3; N-terminal acetyltransferase B complex catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003587 True 5383 mRNA 0.42 7 10625867 10633112
TU2119 False 690 lncRNA 0.38 1 10625346 10626035

Neighbor

gene id symbol gene type direction distance location
AMCG00003584 NA coding downstream 8349 10584660 ~ 10616997 (-)
AMCG00003582 NA coding downstream 45021 10578898 ~ 10580325 (-)
AMCG00003579 LOC107197779 coding downstream 234311 10376843 ~ 10391035 (-)
AMCG00003577 NA coding downstream 308507 10278240 ~ 10316839 (-)
AMCG00003578 xrn2,LOC106571262,LOC108229358,LOC104951730 coding downstream 352579 10236749 ~ 10272767 (-)
AMCG00003589 col12a1,col12a1a,LOC108428624 coding upstream 238229 10871341 ~ 10944875 (-)
AMCG00003588 tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC107714749,LOC108257743,LOC107664818 coding upstream 324297 10957409 ~ 10963201 (-)
AMCG00003592 NA coding upstream 337252 10970364 ~ 10996825 (-)
AMCG00003596 impg1 coding upstream 516957 11150069 ~ 11183677 (-)
AMCG00003597 htr1b,LOC103360562 coding upstream 615975 11249087 ~ 11250247 (-)
G1744 NA non-coding downstream 209459 10414938 ~ 10415887 (-)
G1631 NA non-coding downstream 773008 9852069 ~ 9852338 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding downstream 773919 9850691 ~ 9851427 (-)
G1492 NA non-coding downstream 1445365 9174855 ~ 9179981 (-)
G1415 cpsf3 non-coding downstream 1647497 8974810 ~ 8977849 (-)
G1856 NA non-coding upstream 417039 11050151 ~ 11051078 (-)
G1935 NA non-coding upstream 748760 11381872 ~ 11386054 (-)
G2044 NA non-coding upstream 1099692 11732804 ~ 11863101 (-)
G2052 LOC100846954 non-coding upstream 1225809 11858921 ~ 11905671 (-)
G2066 NA non-coding upstream 1393807 12026919 ~ 12027158 (-)
AMCG00003573 NA other downstream 746902 9874670 ~ 9878444 (-)
AMCG00003572 NA other downstream 759697 9853199 ~ 9865649 (-)
AMCG00003550 NA other downstream 1542496 9009117 ~ 9082850 (-)
AMCG00003484 NA other downstream 5268878 5344070 ~ 5356468 (-)
AMCG00003476 NA other downstream 5816357 4583142 ~ 4808989 (-)
AMCG00003586 NA other upstream 317972 10951084 ~ 10956353 (-)
AMCG00003595 myo6,LOC106571274 other upstream 430009 11063121 ~ 11116905 (-)
AMCG00003618 NA other upstream 1110877 11743989 ~ 11789275 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other upstream 1288879 11921991 ~ 11939783 (-)
AMCG00003625 NA other upstream 1442207 12075319 ~ 12078152 (-)

Expression


Co-expression Network