AMCG00003588 (tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC107714749,LOC108257743,LOC107664818)


Basic Information

Item Value
gene id AMCG00003588
gene name tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC107714749,LOC108257743,LOC107664818
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10957409 ~ 10963201 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003588
TTGCATACGAGAACCCGGATGCAGTCGGTACACGTCATCACGCACGGTACGTCTTGCGAGCCTGGTCGCTTCCTGGATTGATGTAGTGTTCAGTCTGCCTGCAATGGGTGACTACGGTTTATTTTAGGTCCCCCGTAAAACGAAAACATCTGAACACggttttttttaaaacatcgAGACATTCGTGGCACACCGTGTGCCGAGGCGGGTAAACCACCGAGCGGCGGACTGCTTTAAATCAGccgtttttggtttgttttgctcAGTAATTGCACTGCAGACATGATGGCGTCCAGCTATAACGCCAAAGAGGAAGACGGGCACCACTCCGGGGCCTCGGGACCGGGCGCCGCGGCCGTGAAGAGCAAGAAACCGGACAACACCGCCTTCAAACAGCAGCGACTGCCCGCCTGGCAGCCCATCCTCACCGCCGGGACCGTGCTGCCGGCCTTCTTCGTCATCGGGCTCATCTTCATCCCCATCGGCATCGGCCTCTTCGTCACTTCCAACAACATCAAGGAGTTCGAGGTCGATTACACCGGCAGCGACATGGACAGCCCCTGCTACAACTGCTCCTCCAACTACAGCTGGAACAGCACCAGCCCCTGCCAGTGCCGCATCCATTTCACTCTGGACCAGCCCTTTGAGAGCAATGTTTTCATGTACTATGGGCTTTCCAACTTCTACCAGAATCACAGACGATATGTGAAATCTAGGGATGACAGCCAACTCAATGGGGATAAAACTTCATTAAAGGACCCTAGCAAGGAATGCGAGCCATACCGCACGAATGATAACAAACCAATAGCGCCCTGTGGTGCTATTGCCAACAGCCTGTTTAatgACACTTTGGAATTAATTTACAACGACCCCAATGGCAATTTCACCCCTATCCCTCTCGTGAAGAAGGGCATTGCTTGGTGGACTGACAAGAATGTGAAATTTAGAAACCCGGGCGGAAATAACTCCAACCTCACCTCCATTTTCCAAGGTACTACCAAGCCCGTGAACTGGCAGAAGCCGGTGTTTGAACTGGATTTGGACCCAGACAACAATGGCTTCATAAATGAAGACTTCATCGTGTGGATGCGCACTGCAGCGCTGCCCACCTTCCGTAAACTGTACCGCATCATTGAGAAGAAGAGCAACATGAACCCCACCCTGCCGAGGGGCAACTACACGCTGGTGGTCACCTACAAATACCCCGTGCGCAGTTTTGAAGGCCGCAAGAGAATGATCCTCAGCACCATCTCCTGGATGGGAGGGAAGAACCCATTCCTGGGCATCGCTTATATCACTGTGGGCTCGGTGTGCTTCTTCCTGGGCGTGGTCCTGCTGATTATCCACCACAAATACGGGAACCGCAACACCAGTGCAGACATCCCTAACTAACCAGCCCGGAAACCCTGCTGTGCATGCGCGTTACCAGAGGCCCAGACCGGACCGCCAGCTAATGAAGTGTAGAAGCACTGGTTATTGTTCATGTTGTCtgtcttctgtgttttattttatatctttgcatattttatgtCTAGAGGTGGACCTCAGCTAAATGCTTGGACAACTGGATAAACTTATACTAGGTGAGAAACTTTCCTCAAAGAATAGAACGAAAACTGGGCTTTAATAGGCTGAGTTTCTTTGTGCGTTTAACTGTTGCTGGATTTGGAAATCGGCACGTTAAACAGTTTTGCAAGTCTCCTGAAAGCATGGTCCATCTCTATCCGTAACTTGAAAATCTAAGAAAGGCAGAAACTCTATCTTGGTGGAAGGTGCTGACATTTAATCAAGTTGAtgctgaaatataaaaaaagaaaggaatgtgtATGTGAATAtggatgtttatatttaatttctagTAAACAATATTACAAAGTATTGCAGCTGATTTGGCATGTTTCCTGCTGTGTGAATGTAgaattgtcatattttttttgtttttctctccccccccctaaattgtttattaaaggTCAATTCTAACAGGCTTTGCTGTgaaatgtatctgtgtgttaAAGGTTCAAAATTAAGGCAATCATAAGAAATACCTTTTAGgaattgtctttttattttcagttttaaaatactttctattgCGGTAATGCTGTAGATTGTATAAGGCCTTGgaaaatgcatctttttttaatcataatttagttttcattttatataacattatatgtTATACTTGAATGAAGATGTATAGGAAAACGATTGTCTTGTGTTCCATGATGGGAATGCTAATGTTTTAGGGACCAAATACTATGGAATAACATTTAGTttaagatttttatttgtaatcagACAagtcactttttgttttcttctccaaaaTTGAAATACCAAACGCATTCACATGATCGAGTCAATAATTTGCACTTTATGTCTGCAatggatgttttatttatttatacatgtaaatcCTTTTAAAGATGCAACTGTTCCCTTGCTGTGTACATTTTGGTTTCATATTTTCCAAAAGAAGTTTATCACTAAACATTTTATCCTGGAGTGTTTAAATTGTTGccagataaataaattatattaaaaaggttGAAAGCCA

Function

symbol description
tmem30ab Predicted to be involved in phospholipid translocation. Predicted to act upstream of or within phospholipid transport. Predicted to be located in transport vesicle membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and plasma membrane. Orthologous to human TMEM30A (transmembrane protein 30A).

NR:

description
PREDICTED: cell cycle control protein 50A-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003588 True 2563 mRNA 0.44 7 10957409 10963201

Neighbor

gene id symbol gene type direction distance location
AMCG00003589 col12a1,col12a1a,LOC108428624 coding downstream 12534 10871341 ~ 10944875 (-)
AMCG00003584 NA coding downstream 340412 10584660 ~ 10616997 (-)
AMCG00003582 NA coding downstream 377084 10578898 ~ 10580325 (-)
AMCG00003579 LOC107197779 coding downstream 566374 10376843 ~ 10391035 (-)
AMCG00003577 NA coding downstream 640570 10278240 ~ 10316839 (-)
AMCG00003592 NA coding upstream 7163 10970364 ~ 10996825 (-)
AMCG00003596 impg1 coding upstream 186868 11150069 ~ 11183677 (-)
AMCG00003597 htr1b,LOC103360562 coding upstream 285886 11249087 ~ 11250247 (-)
AMCG00003600 NA coding upstream 382743 11345944 ~ 11366600 (-)
AMCG00003602 NA coding upstream 408563 11371764 ~ 11372057 (-)
G1744 NA non-coding downstream 541522 10414938 ~ 10415887 (-)
G1631 NA non-coding downstream 1105071 9852069 ~ 9852338 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding downstream 1105982 9850691 ~ 9851427 (-)
G1492 NA non-coding downstream 1777428 9174855 ~ 9179981 (-)
G1415 cpsf3 non-coding downstream 1979560 8974810 ~ 8977849 (-)
G1856 NA non-coding upstream 86950 11050151 ~ 11051078 (-)
G1935 NA non-coding upstream 418671 11381872 ~ 11386054 (-)
G2044 NA non-coding upstream 769603 11732804 ~ 11863101 (-)
G2052 LOC100846954 non-coding upstream 895720 11858921 ~ 11905671 (-)
G2066 NA non-coding upstream 1063718 12026919 ~ 12027158 (-)
AMCG00003586 NA other downstream 1056 10951084 ~ 10956353 (-)
AMCG00003587 naa20 other downstream 324297 10625346 ~ 10633112 (-)
AMCG00003573 NA other downstream 1078965 9874670 ~ 9878444 (-)
AMCG00003572 NA other downstream 1091760 9853199 ~ 9865649 (-)
AMCG00003550 NA other downstream 1874559 9009117 ~ 9082850 (-)
AMCG00003595 myo6,LOC106571274 other upstream 99920 11063121 ~ 11116905 (-)
AMCG00003618 NA other upstream 780788 11743989 ~ 11789275 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other upstream 958790 11921991 ~ 11939783 (-)
AMCG00003625 NA other upstream 1112118 12075319 ~ 12078152 (-)
G2236 NA other upstream 2071752 13034953 ~ 13035489 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_04038453_04045552 TMEM30A, TMEM30AA, TMEM30AB coding CI01000051 null 4038407 ~ 4046528 (+)