AMCG00003595 (myo6,LOC106571274)


Basic Information

Item Value
gene id AMCG00003595
gene name myo6,LOC106571274
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11063121 ~ 11116905 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003595
ATGATCAAGACAAAGTACGCCGATGAAGAAGGAGGAGGATTCGAAGGGGAAGCACTGGTTGACCCTCTTCACCACGTGATCAAACAGGCGGCTGTAGACCGCCTTCGCCATGGCATCCCGGGCGTTGTTCGCTTGCTCTACCTTCAGAGGAACCCTCATTTAAAAGCTGGCTCACTGAAGGACCCCTTGCTGGACGATCAGGGAGACTTCAACAGGATGTGTGGGGCGATGAAGAAGATCGGCCTGGATGACACGGAAAAGCTGGATCTCTTCAGGGTGGTGGCGGGCGTCCTTCACCTGGGCAACATTGACTTTGAGGAGGCAGGAAGCACATCCGGGGGCTGCACCCTGAAGAACCAGTCCAGCCAGACCCTGGAGTATTGTGCCAAGCTGCTTGGCCTGGACGAAGATGATTTGAGGGTCAGTCTCACCACCAGAGTCATGCTGACGACAGCAGGGGGCGCCAAAGGAACAGTAATCAAATCCTGGACTTCTCCAGCAGATTCTCCGGACACAATAATTGACTGGCTCATCTTCAGCACCTTCATGTCACGGAAAGTTTTGTCGGCTGGAAGGACGCCCAGAAGGGTGCTGAAGGGGGCCTTGACTCACCTTGCCCCTGTTCAAGGGTTCGATCCCTCCATTAGCATCAGCTTTGCCGGCGAGCCTTTCCGTCTCATGCTTCACAGTGCGCAGCGCAAGGGTCAGCAGACAACACTGCCTCTCCGCGGGACCGGGGGCTCGGGATGGCCGTACTTACTCTGTAGGACTTTCGACGTGCACTGGGGCTGGCTTCGTCTGGTAATAGCCCCCGAAAAGTTCAAGTTTCCCCTAGCAGAGTCCCGGCTCCAGTCGGATCAGGGTCCGGTCTCCGCTGCTCCTCTTCCTGCTGCAGCCCTCGGTCTCCCAGTCGAGCGGAATGAATCCAGGGAAATGGCAGTGACGTCACGGCGAGGCGCTGCCGCACTGGGCCGCTGGCGGCGCTGCAGAGTAGCATATGGGACTATGCCACACGTATTTCACTGA
>TU2225
AGCATTTAAAAGCTGGCTCACTGAAGGACCCCTTGCTGGACGATCAGGGAGACTTCAACAGGATGTGTGGGGCGATGAAGAAGATCGGCCTGGATGACACGGAAAAGCTGGATCTCTTCAGGGTGGTGGCGGGCGTCCTTCACCTGGGCAACATTGACTTTGAGGAGGCAGGAAGCACATCCGGGGGCTGCACCCTGAAGAACCAGTCCAGCCAGACCCTGGAGTATTGTGCCAAGCTGCTTGGCCTGGACGAAGATGATTTGAGGGTCAGTCTCACCACCAGAGTCATGCTGACGACAGCAGGGGGCGCCAAAGGAACAGTAATCAAGTAAGACACCTCGCAGTCTTGTTAACTGGCAGACAGGGAGCAAAAGTGGTGGTGTGTTGTCCTTTTCTCCTGCATTTATTCATGAAAACAAGACAAGCCGCC

Function

symbol description
myo6 Enables actin filament binding activity and identical protein binding activity. Involved in several processes, including DNA damage response, signal transduction by p53 class mediator; endocytosis; and positive regulation of transcription by RNA polymerase II. Located in several cellular components, including nucleus; perinuclear region of cytoplasm; and ruffle. Part of RNA polymerase II, holoenzyme and filamentous actin. Colocalizes with clathrin-coated endocytic vesicle. Implicated in autosomal dominant nonsyndromic deafness 22; autosomal recessive nonsyndromic deafness 37; ovarian cancer; and sensorineural hearing loss. Biomarker of prostate cancer.

NR:

description
PREDICTED: unconventional myosin-VI isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003595 True 1026 mRNA 0.57 9 11063121 11116905
TU2225 False 430 TUCP 0.54 2 11103326 11104672

Neighbor

gene id symbol gene type direction distance location
AMCG00003592 NA coding downstream 66296 10970364 ~ 10996825 (-)
AMCG00003588 tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC107714749,LOC108257743,LOC107664818 coding downstream 99920 10957409 ~ 10963201 (-)
AMCG00003589 col12a1,col12a1a,LOC108428624 coding downstream 118246 10871341 ~ 10944875 (-)
AMCG00003584 NA coding downstream 446124 10584660 ~ 10616997 (-)
AMCG00003582 NA coding downstream 482796 10578898 ~ 10580325 (-)
AMCG00003596 impg1 coding upstream 33164 11150069 ~ 11183677 (-)
AMCG00003597 htr1b,LOC103360562 coding upstream 132182 11249087 ~ 11250247 (-)
AMCG00003600 NA coding upstream 229039 11345944 ~ 11366600 (-)
AMCG00003602 NA coding upstream 254859 11371764 ~ 11372057 (-)
AMCG00003601 NA coding upstream 255459 11372364 ~ 11378357 (-)
G1856 NA non-coding downstream 12043 11050151 ~ 11051078 (-)
G1744 NA non-coding downstream 647234 10414938 ~ 10415887 (-)
G1631 NA non-coding downstream 1210783 9852069 ~ 9852338 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding downstream 1211694 9850691 ~ 9851427 (-)
G1492 NA non-coding downstream 1883140 9174855 ~ 9179981 (-)
G1935 NA non-coding upstream 264967 11381872 ~ 11386054 (-)
G2044 NA non-coding upstream 615899 11732804 ~ 11863101 (-)
G2052 LOC100846954 non-coding upstream 742016 11858921 ~ 11905671 (-)
G2066 NA non-coding upstream 910014 12026919 ~ 12027158 (-)
G2071 NA non-coding upstream 934340 12051245 ~ 12051491 (-)
AMCG00003586 NA other downstream 106768 10951084 ~ 10956353 (-)
AMCG00003587 naa20 other downstream 430009 10625346 ~ 10633112 (-)
AMCG00003573 NA other downstream 1184677 9874670 ~ 9878444 (-)
AMCG00003572 NA other downstream 1197472 9853199 ~ 9865649 (-)
AMCG00003550 NA other downstream 1980271 9009117 ~ 9082850 (-)
AMCG00003618 NA other upstream 627084 11743989 ~ 11789275 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other upstream 805086 11921991 ~ 11939783 (-)
AMCG00003625 NA other upstream 958414 12075319 ~ 12078152 (-)
G2236 NA other upstream 1918048 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 1954891 13071796 ~ 13116660 (-)

Expression


Co-expression Network