AMCG00003596 (impg1)


Basic Information

Item Value
gene id AMCG00003596
gene name impg1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11150069 ~ 11183677 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003596
ATGAGCTACATCATAATCAAAGCTTTGTTCACGGTGCTGCAAGATATAAACAGCCAAGAGACTGTGGCCAATTTGAAAAGGACACATTCAGGCCACTTAATAGAGATTTTAAGGACAACCAAACCATCCTCAAATATCAGGTCAATATTTGAGCTGGAAAGACATCGGACAAAAAGATCAGCATTTTTCCACACAGGAGTGAAAGTCTGCCCTCAGGAGACCATCAAAGAAATAATTGCCAGCCACCAAGCTTACTACAAACTACGAGGTGCCTGTTGTTATTCAGTTTGTCAGGAAGCCGTGTGGGAGGCCTTCAGGGTGTTCCTGGACAGGATTCCAGACACTGCCGAGTACCAGCGCTGGGTCACCACATGCCAGCAGCAATCCCTCTGCATCGCGGACCTGGCGAGGAACTTTAGCAGCTCTCAGGAACATCTGGACATGGTTCAACGGaGAGTTCACCTGAGAGATGAAAAGCTGGCAGAACGGGTGGTGAAGACTGAACCAGTGACAGAAAAGGTCCCAGAAACTACAACAGGTTCAAAAGAAACTTTCACTTCAACTCTAGAAGTATCAAGACCAGATGACACCGTTCCTAATGAAATTGTGAATGACACAAAGGTCCCTGACAAGGACCTGGAGCTTGCAAACACAGTGCCTGAGCAGCTGGTGGATCAGGTGGTAGAGTTCAGTGTGACTCTCGTGGATCAAGGCTACTCTGAGCTCCTGAGTGATTCCGACAGCCCCCAGTACCAGGACCTCACCCAGACCCTCTATGATCAGTATGCTTTGACTTCCAGATCTGAAGGCGTGTCTGTTCGTTATGCTGCCGTCTTTGAAATCATATCATCAGACTACAGTAACATTGGTGATGAGATCATGGACCCGATGAGATATGATGAGAAAACCATAGTTTCAGTGTCCAACCTCAGGGAGCTGATAGCCAAAGCCTTGCACGAAGAGAAATCCCTTCTACTGGATCTGGattcaattaatttagaacCAGGTAAGAGGTGGCCCAGTTTGGAGCCAGATTCCCACAATGAGCTAACACTTTCTACAGAGAATCCAGCTCTAGAGGTGGACAAGCCACGGCTTGACCTTCCCGTTGACCCCTCAGAAAAGGATAATGCCTTGGAAACGCTTCTAGGTGCAACAACTGAGAATCAGttgaaagaaaaggagagtAAGGAGGAAGCCACAGGCCAATCCACCACCGACAGCATCGCATTAACAGAACCCACTCACAGTGTCATGCCTACAGTTATGCAGGTCACAATCGACCAGGTCACAGAGGAGGTTACCGTTCACTCCACAGTGGAGGAAACTGACTCCTTACCTGAGACCAGCACACAAATCATGCTCCCCACAACTAGTGCGAACCCTCCTTCCCAAGAGGGGGTTACCATTCACTCCACAGTGGAGGAAACTGACTCCTTACCTGTAACCACCCTGTCCGCTATTACACAGCAGCCACCAACCGAACTGATCATAAGCTTTAAACCAGATGACGAAGGTTACAATGTGATTCCAGAGGGAGGTGACTCCCATTCAGATTCTGAAGGGGGAGAAGCTAAAGGGGAAGTCACAGTTTTACTTGAACCAACTGCTATTGTGCCAGTGACAACATCGGCAGAAGACATCAGCGTAGCAGAAGACACCCCAATAATGCCACCCACATACGAACTACAAACAGACCCTGACACGTCTGTTCCTCTCACCACTACTGCTCCGACAAAGCCTCCAACCGTGTCCAGTGAACCAGACACAATTCTCACACCAGATTTAGGACCCTTTGAAGCAGCTGTCACTGATACCCCCTTAACTAGTTATGGGCCCAGCTTAGAAGCAGCACCAAATGATGTTGGAACTATGAAGCCATCAGTCACTGAGCCTTCAATCACAGACTTTTACACTGAGACCACAAGAGCCGTGCCTTTGACCGTATTAATTGAGACTTCTGTGGAAGAGATGACTGAATCTTCTGTGCGAGAAGCAGTCACGTCGGTGGCACCTTTCACCACACACTATGGATCTCCCAGTCCCAAGCCAACAGCTCCTGAAGAGCAGGAACCAGCAACCCACACGATTGCCCCAACGGTGAAAGACAAGGATATAGACTTTGAAACAGGAGTGCAAGACATCACAGCTGAGCTGGACAGGATTGACGTGGTCGACACTGAGAACATCAATGAACTGGAGTACAGCAGCGGATACCCTTTTGTAACAGACGAACACCCATTTGAAACCACAGCTTCCCCACCACTGAAATATCTGACCACTCCCTCGATGACCACGGCGAGCAAGGGCAAAGAGTTAGTAGTGTTCTTTAGCTTGCGAGTAACTAACGTGATGTTTTCAGATGACCTGTTCAACAAGAGCTCTCCTGAATACAGATCTTTGGAGAATACATTCCTTGAACTGctCCTCCCCTACCTACAGTCTAACTTGACAGGATTTAAACAGTTAGAGATTCTCAACTTCAGGAATGGAAGTGTGATAGTCAATAGCAAGATGAAATTTGCCAAGTCTGTGCCATATAACGTCACCCAGGCGGTGCACTGTGTCCTAGAGGATTTCTGCAACGCAGCAGCCAAGCGTCTTGACATTGAGATTGACAGTCGATCTCTGGATGTGGAGCCGGCTGATCAAGCAGATCCGTGCAAGTTTTTGGCCTGCAACGAGTTTGCAAGGTGTATGGTAAACAGATGGACCAAGGAGgccgagtgtgtgtgtgagccgGGCTACATCAGTGTGGATGGCCTGCCGTGTCAGAGTATCTGTAGTCTCCAGCCAGACTTCTGCCTCAATGGTGGGCAGTGTGAAATAATTCCAGGGCATGGAGCTGCTTGCAGGTACCTGAGACCCAGTAGGCCACACTAA

Function

symbol description
impg1 Predicted to enable chondroitin sulfate binding activity; heparin binding activity; and hyaluronic acid binding activity. Predicted to be involved in visual perception. Predicted to act upstream of or within extracellular matrix organization. Predicted to be located in extracellular matrix. Implicated in vitelliform macular dystrophy.

NR:

description
PREDICTED: interphotoreceptor matrix proteoglycan 1 isoform X5

GO: NA

KEGG:

id description
K19016 IMPG1, SPACR; interphotoreceptor matrix proteoglycan 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003596 True 2883 mRNA 0.48 13 11150069 11183677

Neighbor

gene id symbol gene type direction distance location
AMCG00003592 NA coding downstream 153244 10970364 ~ 10996825 (-)
AMCG00003588 tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC107714749,LOC108257743,LOC107664818 coding downstream 186868 10957409 ~ 10963201 (-)
AMCG00003589 col12a1,col12a1a,LOC108428624 coding downstream 205194 10871341 ~ 10944875 (-)
AMCG00003584 NA coding downstream 533072 10584660 ~ 10616997 (-)
AMCG00003582 NA coding downstream 569744 10578898 ~ 10580325 (-)
AMCG00003597 htr1b,LOC103360562 coding upstream 65410 11249087 ~ 11250247 (-)
AMCG00003600 NA coding upstream 162267 11345944 ~ 11366600 (-)
AMCG00003602 NA coding upstream 188087 11371764 ~ 11372057 (-)
AMCG00003601 NA coding upstream 188687 11372364 ~ 11378357 (-)
AMCG00003612 NA coding upstream 301333 11485010 ~ 11487557 (-)
G1856 NA non-coding downstream 98991 11050151 ~ 11051078 (-)
G1744 NA non-coding downstream 734182 10414938 ~ 10415887 (-)
G1631 NA non-coding downstream 1297731 9852069 ~ 9852338 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding downstream 1298642 9850691 ~ 9851427 (-)
G1492 NA non-coding downstream 1970088 9174855 ~ 9179981 (-)
G1935 NA non-coding upstream 198195 11381872 ~ 11386054 (-)
G2044 NA non-coding upstream 549127 11732804 ~ 11863101 (-)
G2052 LOC100846954 non-coding upstream 675244 11858921 ~ 11905671 (-)
G2066 NA non-coding upstream 843242 12026919 ~ 12027158 (-)
G2071 NA non-coding upstream 867568 12051245 ~ 12051491 (-)
AMCG00003595 myo6,LOC106571274 other downstream 33164 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 193716 10951084 ~ 10956353 (-)
AMCG00003587 naa20 other downstream 516957 10625346 ~ 10633112 (-)
AMCG00003573 NA other downstream 1271625 9874670 ~ 9878444 (-)
AMCG00003572 NA other downstream 1284420 9853199 ~ 9865649 (-)
AMCG00003618 NA other upstream 560312 11743989 ~ 11789275 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other upstream 738314 11921991 ~ 11939783 (-)
AMCG00003625 NA other upstream 891642 12075319 ~ 12078152 (-)
G2236 NA other upstream 1851276 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 1888119 13071796 ~ 13116660 (-)

Expression


Co-expression Network