AMCG00003597 (htr1b,LOC103360562)



Basic Information


Item Value
gene id AMCG00003597
gene name htr1b,LOC103360562
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11249087 ~ 11250247 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00003597
ATGGATCAGCCGGGCCACTTTAAACCACCACCCGGCGCCTATGGAGAAGTATTGAATATTTCCTCCAGCGACAGCAATGTCACCCACGGCAGCCAGCCCGAAGAAGGGGACGGGAACTTGGTTTTCCAGATCAGTCTAGCCCTCACGCTTTCCCTGATAACTTTTGCCACTAGTTTAGCCAATGCATTTGTCATTGCCACCATTTACCAGTCCAGAAAGCTACACACCCCGGCCAACTTCCTCATCGCCTCGCTGGCCGTCACTGACCTCCTGGTGTCCATCCTGGTGATGCCCATCAGCGCACTCTACACCGTCAGGCACACCTGGACTTTGGGACAAGTCGTTTGCGACATATGGCTGTCCTCAGACATCACCTGTTGCACCGCATCCATCCTCCACCTGTGCGTAATCGCCTTGGATCGGTACTGGGCCATCACGGATGCTGTGGAGTACGCCAAAAAGCGCACCCCTGCCCGGGCGGGCGGGATGATCGCCGTCGCCTGGGTCATCGCCATCTCCATCTCCATGCCGCCGCTCTTCTGGCGCCAGGAGAAGGCAGAGGAGGTGACCAGCTGCAACGTGAACACGGACCACATCTTCTACACCATCTACTCCACCTTCGGAGCCTTCTACATCCCCACCCTGCTGCTGATCGTGCTGTACGGCAGGATCTACGTGGAAGCCCGCAGCAGGATCTTAAAACAGTCGCCCAAAAACAAGGCCGGGAAGAGACTGACCTCGGCGCACCTGATCACCGACTCCCCGGGGTCGGTGGCCTCCAGCACCTCCCTGAACCACAGGGCGCAGGAGACCTCCTCCACCAGCGACACCGGCTCGCCCCTCCACCCCAACCAAGTGAAAGTGTCGGTGTCCGATGCGCTGCTGGAAAAAAAGAGGATCTCCGCCGCCAGGGAGAAAAAAGCCACCAAAACCTTAGGGATCATACTGGGAGCGTATATAATCTGCTGGCTGCCCTTCTTTATTACCACCCTGATGGTGCCAGTGTGCGCATCATGCACCTTCTACCCCGAGTTGTTTGATTTCTTCACCTGGCTGGGCTACCTCAACTCTTTGATCAACCCCATCATTTACACCATGTTTAATGAAGATTTCAAAAAGGCTTTCCAGAAACTCATACGCTTTAGGTGTTGCAGATCTTGA

Function


symbol description
htr1b Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within several processes, including G protein-coupled receptor signaling pathway; bone remodeling; and vasoconstriction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Is expressed in central nervous system; pharynx; and retina. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder and conduct disorder. Orthologous to human HTR1B (5-hydroxytryptamine receptor 1B).

NR:

description
5-hydroxytryptamine receptor 1B

GO: NA

KEGG:

id description
K04153 HTR1; 5-hydroxytryptamine receptor 1

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00003597 True 1161 mRNA 0.56 1 11249087 11250247

Neighbor


gene id symbol gene type direction distance location
AMCG00003596 impg1 coding downstream 65410 11150069 ~ 11183677 (-)
AMCG00003592 NA coding downstream 252262 10970364 ~ 10996825 (-)
AMCG00003588 tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC107714749,LOC108257743,LOC107664818 coding downstream 285886 10957409 ~ 10963201 (-)
AMCG00003589 col12a1,col12a1a,LOC108428624 coding downstream 304212 10871341 ~ 10944875 (-)
AMCG00003584 NA coding downstream 632090 10584660 ~ 10616997 (-)
AMCG00003600 NA coding upstream 95697 11345944 ~ 11366600 (-)
AMCG00003602 NA coding upstream 121517 11371764 ~ 11372057 (-)
AMCG00003601 NA coding upstream 122117 11372364 ~ 11378357 (-)
AMCG00003612 NA coding upstream 234763 11485010 ~ 11487557 (-)
AMCG00003610 NA coding upstream 278057 11528304 ~ 11542645 (-)
G1856 NA non-coding downstream 198009 11050151 ~ 11051078 (-)
G1744 NA non-coding downstream 833200 10414938 ~ 10415887 (-)
G1631 NA non-coding downstream 1396749 9852069 ~ 9852338 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding downstream 1397660 9850691 ~ 9851427 (-)
G1492 NA non-coding downstream 2069106 9174855 ~ 9179981 (-)
G1935 NA non-coding upstream 131625 11381872 ~ 11386054 (-)
G2044 NA non-coding upstream 482557 11732804 ~ 11863101 (-)
G2052 LOC100846954 non-coding upstream 608674 11858921 ~ 11905671 (-)
G2066 NA non-coding upstream 776672 12026919 ~ 12027158 (-)
G2071 NA non-coding upstream 800998 12051245 ~ 12051491 (-)
AMCG00003595 myo6,LOC106571274 other downstream 132182 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 292734 10951084 ~ 10956353 (-)
AMCG00003587 naa20 other downstream 615975 10625346 ~ 10633112 (-)
AMCG00003573 NA other downstream 1370643 9874670 ~ 9878444 (-)
AMCG00003572 NA other downstream 1383438 9853199 ~ 9865649 (-)
AMCG00003618 NA other upstream 493742 11743989 ~ 11789275 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other upstream 671744 11921991 ~ 11939783 (-)
AMCG00003625 NA other upstream 825072 12075319 ~ 12078152 (-)
G2236 NA other upstream 1784706 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 1821549 13071796 ~ 13116660 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000062_01787025_01788167 HTR1E, HTR1B coding CI01000062 null 1787016 ~ 1788512 (-)