AMCG00003600


Basic Information

Item Value
gene id AMCG00003600
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11345944 ~ 11366600 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003600
CGTCACTCGAGGAGGCGCACAGGACGAGTCGCCTGTTCAAAACCGgaacagcattttatttcttgttatgCAAAATCACACCGCTTATGTTATCTGAACACATAGCTGTATATTGGTGAAATTGACAACACGGCCAGCTGCCTGGGGCTTTACAGAGATGTTGCGGTTAAAGTGACTCCGATACGCGTTCCTGGATAGGAGGTTCCCGTCTGCAGAGTGCCCACGATGGAATGCCTGAGACTTAAACTGGAAAACCTCAAACAGAGACTGAAGGTGGATCTTTTCAGAGAAGTCGGTCGCCAGTATCCagtcttctgttttattttgctgctcTTACTTGTGTCCACGGTTCTTCTCAATAGATACCTCCACATTCTGATGATATTTTGGTCTTTCTTAGCTggaattgttacattttactgCTCCTTAGGCCCCGAATCTCTTTTGCCAAACATCCTCTTCACAATAAAGCCAAAAAACAAGCAAGAGCAGCAGGAGCTATTTCCCTTGGGTAACAGCTGTGCAgtctgtggaaaaataaaatgcaagcgTCACAGGGATATTACAGATGATGAAGCATTTGTTGACGAGTTGAGAGTCACGTTGCGCTTCTTTTCTGCGGTCTTAGTTCGCCGAGCACAGAAGGTTGATGTTCCATCTCTCATAACCAGCAAATTGCTGAAAGCCGCAATGAAGCACATTGAAGTAATTGCTAAAGCAAGGCAGAGAgTGAAAAACGCCGAATACCTACAACAGGCTGCGCTGGAAGAGTATGGGCCGGACCTCCACGTGGCTGTGCGCAGCCGGAGGGACGAGCTGCTGTACTTGAGGAAGTTAACCGAGATGCTCTTCCCTTACATCCTGCCTCCCAAAGCATCGGACTGCAGATCACTATCCTTGCTGATTCGGGAGATTCTAGCGGGATCCGTTTTTCTTCCCTCGATGGATTTCTTGGCCGACCCTGATACGGTCAACCATTTGATTCTTATATTCATCGATGACACTCCAcCTGAACCTGCAACCGAGCCACCTTCAATTCTAGTCCCTTTCCTGCAAAAATACGCCGAGTCCAGGAATAAGAAGCCATCTGTGCTGAAACTGGAGCTGAAGGAGATCCGGGAGCAGCAGGACCTGCTCTTCCGTTTCATGAACTTCCTGAAGCAGGAGGGCGCTGTGCACGAGTTCAACGACAAGATCTTATGTCCAGAACTGACAGACTCGGAAATGCTCGCTCTCCACGAGGAAGTGAAGAAGATCTATGGGTCATACTGCCTCGATGAGAGCATTGACAAGATCCGCTTCGATCTGTTCATTGTGGAGGAAATAAGAAACATTGCAGAAGGGCCCTACAAGGACGTTGTGAAATTGCAAACCATGCGCTGCCTGTTTGAGGCTTACGAGCATGTCTTGTCTCTGTTAGAAAACGTCTTCACACCCATGTTTTGCCACAGCGATGAGTATTTTAGGCAGCTGTTAAGAGGTGCAGAATCTCCAGCAAGGAATTCAAAACTAAGCAGAAATAGCCTGAGTTTGGATGACATCCGGAACACCTCGAAACGCGGGGAGTCGTTTGGAATCGGCCGCATCGGCAGTAAAATTAAGggagtttttaaaagcacaacgATGGAAGGGGCCATGCTGCCGTCCTATGGGGTAGCAGAAGGAGAGGACGACATGGTTGAAGAGGCAATCATGGTTGTAGAGGATGACTCCCCGGTAGAAGCCATCAGCACGCCCAGCACACCCCGCAATCTCTCGGCCTGGAAGATAACCATCCCCTACGTGGACTTCTTTGACGACGAGATCAAGAAAGAGAGGATCCCAGTGTTCTGTATCGATGTGGAGCGGAACGACAGGAAGGCGGTTGGCCACGAAACGGAACACTGGTCGGTTTACAGAAGATACCTTGAGTTCTATGTACTGGAATCCAAACTGACAGAATTCCATGATGCTCAACTTCCATCCAAACGAATTATTGGTCCAAAGAATTATGAGTTCTTAATGTCCAAGCGGGAAGAGTTCCAGGAATACATGCAGAAACTTTTGCAGCATCCAGAGCTGAGCAACAGTCAGTTGTTGGCTGATTTCCTGTCCCCCCACAGCATGGAGTCTCAGTTTCTTGACAAAATGCTGCCAGATGTCAATCTTGGGAAAATTATTAAATCTGTTCCTGGGAAACTGATAAAGGAAAAAGGCCAGCACTTGGAGACATTTATCCAGTCCTTCTTCAATTCGTGTGAATCCCCGAAGCCCAAGCCCAGCCGCCCAGAACTGACCATCCTGAGTCCCACCTCGGAGAACAACAAGAAGCTTTTCAATGATCTGTTCAAAAATAACGCCAACCGCTCCGAGAGCACAGAGAAGAAATACAATCAGAACTATTTCATGGAGATGATCAACGTGGAGGGCATCTATGACTACCTGATGTATGTTGATGCGGTGTTCTGTGAGAACAGTGAACCCCGATCCTCCCAAGACAAGCAAAGACGAGCGAAGAAGACCTTTGAAGAGATGATGAGCTACATTCCAGAGTTCTTGGGCAAATGCATCGGGGAGGAGGCCCAGTACGAGGGAATCCGATTGCTCTTCGAAGGGCTGCAGCAACCAGTGCTGAACAAGCAGCTTACCTATGTTCTTCTGGACATTGCTGTTCAAGAGCTTTTTCCTGAATTAAATAAGGTAAACAGGGATTTTATTAAGCTTGTGTTGAAGAACAATCAGtcatcaggttggaacgtttgttgcaatgcctttattacacgtgacgtggagaacagcagtgaatcaagaagaatCCAAAGttgctctgccttcattttaacagtcagagcttttagacacaaaaataaaagagctGGTTATAATCAGAAATTCATTACTGTGTTATCTTAaaagttagctaagcagaatatatatcattataggacagagttagatcaacacatggattagggagcaggcacttcagCTACTAACTGCCAGAGTACAAACGTgactcattttaatatgacaacGTTTTTCCCAAATAccatgtttgaaaatgttatccAGCGTATTTTATACACAAGGCCAAAAACATTGGAAAGAGTTCCAGTTCACAGATACAGTGGGGGATCAGCGTTAATAGTGTCCTTGGCCTGGACTTCGTTACTTTAACCAAACTTTGATGACAGCAAGATGTTTTTTAGAGATTGCATCAGGGTGTTTGttgtatgcattgtgttgcCTGCGTTTAACTGTACCACATCTAGAGACAGCTCTGGGGACAGATACTGTGTGCCTACTTTCATCATAAAAACAATAGTGTTGGGTACATTTCCCCCCATTTTCTCCTCctcaaaacatttgaataatgatCTTTggtgtgatttgtttgtatggAGACGGGTCTAATGTCATTTTGCTCTCCTTCAGCAGGTACAGAAGGAGGTCTCAACTATAGCTCCTTGGATGTAGGAGTCACGCATCGATTGATCCAACGCATGTGCAATACACTGCTGTGAATACCATGTGACCAGCGGTGACAGGATTTCACCTCTTTGCAGTTTGTCCtgattttaaatcatttttattaaaaatgccacaatgaaaaaacaaacaaaaaaagccccCTGCTGAAAACACTAACACTACAATGTATCATATTGCACTAATAAAagatatttattgatttgaaacGTGTTGGATATGTCTTTAGTGTAGCAGTCAAAGCATTGACCACATGATGACACTAAGCAATATGTGTTCTCCCCTAACACAAACCCCATTACCACAGGTTTCAGTGGGGCATTTAGCACATGGAAGTCTTTagtctgtttgtttatataaacaCCAGTGTGGGGGATATGTTTTCCATGTGAAAA

Function

GO: NA

KEGG:

id description
K17926 SNX14; sorting nexin-14

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003600 True 3863 mRNA 0.45 26 11345944 11366600

Neighbor

gene id symbol gene type direction distance location
AMCG00003597 htr1b,LOC103360562 coding downstream 95697 11249087 ~ 11250247 (-)
AMCG00003596 impg1 coding downstream 162267 11150069 ~ 11183677 (-)
AMCG00003592 NA coding downstream 349119 10970364 ~ 10996825 (-)
AMCG00003588 tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC107714749,LOC108257743,LOC107664818 coding downstream 382743 10957409 ~ 10963201 (-)
AMCG00003589 col12a1,col12a1a,LOC108428624 coding downstream 401069 10871341 ~ 10944875 (-)
AMCG00003602 NA coding upstream 5164 11371764 ~ 11372057 (-)
AMCG00003601 NA coding upstream 5764 11372364 ~ 11378357 (-)
AMCG00003612 NA coding upstream 118410 11485010 ~ 11487557 (-)
AMCG00003610 NA coding upstream 161704 11528304 ~ 11542645 (-)
AMCG00003611 NA coding upstream 193962 11560562 ~ 11568281 (-)
G1856 NA non-coding downstream 294866 11050151 ~ 11051078 (-)
G1744 NA non-coding downstream 930057 10414938 ~ 10415887 (-)
G1631 NA non-coding downstream 1493606 9852069 ~ 9852338 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding downstream 1494517 9850691 ~ 9851427 (-)
G1492 NA non-coding downstream 2165963 9174855 ~ 9179981 (-)
G1935 NA non-coding upstream 15272 11381872 ~ 11386054 (-)
G2044 NA non-coding upstream 366204 11732804 ~ 11863101 (-)
G2052 LOC100846954 non-coding upstream 492321 11858921 ~ 11905671 (-)
G2066 NA non-coding upstream 660319 12026919 ~ 12027158 (-)
G2071 NA non-coding upstream 684645 12051245 ~ 12051491 (-)
AMCG00003595 myo6,LOC106571274 other downstream 229039 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 389591 10951084 ~ 10956353 (-)
AMCG00003587 naa20 other downstream 712832 10625346 ~ 10633112 (-)
AMCG00003573 NA other downstream 1467500 9874670 ~ 9878444 (-)
AMCG00003572 NA other downstream 1480295 9853199 ~ 9865649 (-)
AMCG00003618 NA other upstream 377389 11743989 ~ 11789275 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other upstream 555391 11921991 ~ 11939783 (-)
AMCG00003625 NA other upstream 708719 12075319 ~ 12078152 (-)
G2236 NA other upstream 1668353 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 1705196 13071796 ~ 13116660 (-)

Expression


Co-expression Network