AMCG00003606


Basic Information

Item Value
gene id AMCG00003606
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11490185 ~ 11491597 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003606
GCTTTGCGGGTGTGTTTAGATTTGTGTTTCCCTCCAGTGTAAGTTAAATTACTCTCTGTTTTAAGAGTACCCTTATCACGCTGTATGTGTCTGTGCTACCGACACAGAAACAAAGGTCACGAAAATGCAATATGAAGTGCAAGTATAAGCCTGAAGGCTTTGGTTCCAATACAAGAAGTGATGCGCATACCCGGGCAATGTCGTCTCAGGGTCCTGACCCGGGCGGTGGCAAGACAGAGCCTGCAGCCGAGAAGGGCTACCGGACCCCCGGGCTGAGGGGAGTGCAGACCACGTCCCTGTTCCGGGCAATAAACCCCGAGCTCTTCATTAAACCGAACAAGCCCGTGATGGCCTTCGGGCTCCTCACCATCTCGCTCTGCGTGGGGTACCTCGGGTACCTTCATGccaccacagaaaacaaacaggactTGTATGAAGCCGTGGACAGCGAGGGAGTGAGTCAGATGAGAAGGAGGACATCCAAATGGGACTGATCGCTGACGGTTTCCTGGACATAAAGACACTCTCTTTGCCTCAATCTATGTTTATGAATTAGAAAAACCGAACAATGTTAATCTGGAGGTTCTGCGGGCCTTCGCGCTTTCTAACGGCGTTGACCATCTCAGCTCTTGTTTTTGGATCCAAACTTTGGTGGTGAAAATCTGAATTCGGTAGCTGGTGTAAATGAATGTTGGAaccgtgtaaatatttgtttcctaGTGAATAAGCAGCAACACATCTGCCGAACATGTTcattatatcaaaataaatacattctgttcAAATGATTTTCCTTAAATTCACTGttatggtttttatttattttccctgcaaATGAATGGGAATGTTTAGCTCACGTAGTGAGAAATATCTGCTCGTAGTATCTTTCTTCTTTAACTTGGCAGTGCCACTACAGAAGTTAATATAATTACTAATGTCAATATACATCAAGA
>TU2334
ACCCCGGCAAACTCTACGTCTTGTATTGTTGCTGATCTCCTTGGGAAAACAGGCGCTTTGCGGGTGTGTTTAGATTTGTGTTTCCCTCCAGTACCCGGGCAATGTCGTCTCAGGGTCCTGACCCGGGCGGTGGCAAGACAGAGCCTGCAGCCGAGAAGGGCTACCGGACCCCCGGGCTGAGGGGAGTGCAGACCACGTCCCTGTTCCGGGCAATAAACCCCGAGCTCTTCATTAAACCGAACAAGCCCGTGATGGCCTTCGGGCTCCTCACCATCTCGCTCTGCGTGGGGTACCTCGGGTACCTTCATGccaccacagaaaacaaacaggactTGTATGAAGCCGTGGACAGCGAGGGAGTGAGTCAGATGAGAAGGAGGACATCCAAATGGGACTGATCGCTGACGGTTTCCTGGACATAAAGACACTCTCTTTGCCTCAATCTATGTTTATGAATTAGAAAAACCGAACAATGTTAATCTGGAGGTTCTGCGGGCCTTCGCGCTTTCTAACGGCGTTGACCATCTCAGCTCTTGTTTTTGGATCCAAACTTTGGTGGTGAAAATCTGAATTCGGTAGCTGGTGTAAATGAATGTTGGAaccgtgtaaatatttgtttcctaGTGAATAAGCAGCAACACATCTGCCGAACATGTTcattatatcaaaataaatacattctgttcAAATGATTTTCCTTAAA

Function

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0022900 electron transport chain biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003606 True 953 mRNA 0.45 3 11490239 11491597
TU2334 False 703 TUCP 0.49 3 11490185 11491443

Neighbor

gene id symbol gene type direction distance location
AMCG00003603 NA coding upstream 30122 11449320 ~ 11460063 (+)
AMCG00003599 NA coding upstream 147161 11316201 ~ 11343024 (+)
AMCG00003598 NA coding upstream 217025 11261733 ~ 11273160 (+)
AMCG00003593 myo6b coding upstream 357715 11107394 ~ 11132470 (+)
AMCG00003594 LOC106565365,LOC106610693 coding upstream 391225 11084163 ~ 11098960 (+)
AMCG00003607 NA coding downstream 2355 11493952 ~ 11508306 (+)
AMCG00003608 NA coding downstream 18808 11510405 ~ 11515479 (+)
AMCG00003605 slc35a1,LOC106607707 coding downstream 27909 11519506 ~ 11527074 (+)
AMCG00003609 NA coding downstream 50970 11542567 ~ 11559145 (+)
AMCG00003615 NA coding downstream 240958 11732555 ~ 11742638 (+)
G1902 NA non-coding upstream 87156 11331039 ~ 11403029 (+)
G1891 NA non-coding upstream 261910 11227959 ~ 11228275 (+)
G1855 NA non-coding upstream 439541 11050151 ~ 11050644 (+)
G1747 ralgapa2 non-coding upstream 1032420 10431664 ~ 10457765 (+)
G1706 NA non-coding upstream 1251924 10236856 ~ 10238261 (+)
G1987 NA non-coding downstream 78455 11570052 ~ 11570410 (+)
G2018 NA non-coding downstream 321525 11813122 ~ 11831420 (+)
G2027 NA non-coding downstream 414386 11905983 ~ 11906188 (+)
G2042 NA non-coding downstream 534529 12026126 ~ 12028193 (+)
G2086 NA non-coding downstream 595940 12087537 ~ 12088986 (+)
AMCG00003604 NA other upstream 7254 11461663 ~ 11482931 (+)
AMCG00003570 NA other upstream 1708429 9777508 ~ 9781756 (+)
AMCG00003551 NA other upstream 2226717 9255828 ~ 9263468 (+)
AMCG00003544 NA other upstream 2383420 9075890 ~ 9106765 (+)
AMCG00003541 asap2,LOC106566627 other upstream 2548434 8900456 ~ 8941751 (+)
G1989 cnr1,LOC104936193 other downstream 82134 11573731 ~ 11577329 (+)
AMCG00003614 NA other downstream 233486 11725083 ~ 11729991 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other downstream 1410969 12902566 ~ 12917002 (+)
AMCG00003648 LOC106571761 other downstream 1533972 13025569 ~ 13042597 (+)
AMCG00003655 xdh other downstream 1663463 13155060 ~ 13206839 (+)

Expression


Co-expression Network