AMCG00003612


Basic Information

Item Value
gene id AMCG00003612
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11485010 ~ 11487557 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003612
ATGACGAAGGGAATAGGTGTGGTTAGGGAGCAGAGGCGGGGACAGAAGCTTTACAAGGACAAGGGGAAGATCGACGGAGGCCTGCTGTTCACCTACCTGATCAGCCTCTTATTCAAGACCTTCTTTGAGGTGGGCTCCCTGCTGGCCTTCTACTTCCTGTACAGTGGCTTCGACGTCCCCAGGCTCCTCCAGTGCAACCAGAGCCCTTGCCCCAACACCGTCGACTGCTACATCTCAAAGGCCACCGAGAAGAAGATCTTCCTCTACATCATGGGCTGCACGTCCATCTTGTGCATCGTGCTCAATGTGTGCGAGATGTTCTACATCCTCCTGAAACAGTGCTGGAAGTGCTTTTCCAAGAGGTACATCCCCATTGAAGACAGTCATCAAAAGCAGCAGCTCAGACAACATCAGAGCACCTTGATTTTACACCCTGGGATCCTGGATCAAGACCAAAGCACGAGTTCCCGCAGCAATCAAGGAAAAAGTACCTAA

Function

GO:

id name namespace
GO:0044425 obsolete membrane part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005921 gap junction cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003612 True 495 mRNA 0.52 2 11485010 11487557

Neighbor

gene id symbol gene type direction distance location
AMCG00003601 NA coding downstream 106653 11372364 ~ 11378357 (-)
AMCG00003602 NA coding downstream 112953 11371764 ~ 11372057 (-)
AMCG00003600 NA coding downstream 118410 11345944 ~ 11366600 (-)
AMCG00003597 htr1b,LOC103360562 coding downstream 234763 11249087 ~ 11250247 (-)
AMCG00003596 impg1 coding downstream 301333 11150069 ~ 11183677 (-)
AMCG00003610 NA coding upstream 40747 11528304 ~ 11542645 (-)
AMCG00003611 NA coding upstream 73005 11560562 ~ 11568281 (-)
AMCG00003613 cnr1,LOC104936193 coding upstream 88308 11575865 ~ 11577277 (-)
AMCG00003617 NA coding upstream 121606 11609163 ~ 11611680 (-)
AMCG00003616 rngtt,LOC107554925,LOC107660510 coding upstream 220000 11707557 ~ 11720740 (-)
G1935 NA non-coding downstream 98956 11381872 ~ 11386054 (-)
G1856 NA non-coding downstream 433932 11050151 ~ 11051078 (-)
G1744 NA non-coding downstream 1069123 10414938 ~ 10415887 (-)
G1631 NA non-coding downstream 1632672 9852069 ~ 9852338 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding downstream 1633583 9850691 ~ 9851427 (-)
G2044 NA non-coding upstream 245247 11732804 ~ 11863101 (-)
G2052 LOC100846954 non-coding upstream 371364 11858921 ~ 11905671 (-)
G2066 NA non-coding upstream 539362 12026919 ~ 12027158 (-)
G2071 NA non-coding upstream 563688 12051245 ~ 12051491 (-)
G2079 NA non-coding upstream 580492 12068049 ~ 12068258 (-)
AMCG00003595 myo6,LOC106571274 other downstream 368105 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 528657 10951084 ~ 10956353 (-)
AMCG00003587 naa20 other downstream 851898 10625346 ~ 10633112 (-)
AMCG00003573 NA other downstream 1606566 9874670 ~ 9878444 (-)
AMCG00003572 NA other downstream 1619361 9853199 ~ 9865649 (-)
AMCG00003618 NA other upstream 256432 11743989 ~ 11789275 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other upstream 434434 11921991 ~ 11939783 (-)
AMCG00003625 NA other upstream 587762 12075319 ~ 12078152 (-)
G2236 NA other upstream 1547396 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 1584239 13071796 ~ 13116660 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017043 cx28.8 coding NC_007131.7 CM002904.2 190028 ~ 194622 (+)