AMCG00003613 (cnr1,LOC104936193)


Basic Information

Item Value
gene id AMCG00003613
gene name cnr1,LOC104936193
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11575865 ~ 11577277 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003613
ATGAAGTCTGTCCTGGATGGCGTAGCAGATACCACGTTCAGAACCATCACCACTGGGCTGCAGTACCTCGGGTCAAATGACGTCCATTACGATGACCCCGGCGCCGATGCGGACTTCACGAAGACTGGATACGCCTTACAGAAGCTGCCTTTCTCTGCGTTCAGAAGCAACTCGTTCCAGGGCAAGGTGACGGCTGACGAGGAGCTCTTCTTGAAGGGCATCCCCTTCTACCCGACCAACATCACTGACCTATACAGCAACAAAAGCACTGCGAGCAATATGGAGGAGGAGAGCAACATCCAGTGTGGGCAGAACTTCATGGATATGGAATGCTTTATGATCCTGACTCCCAGCCAGCAGCTGGCCGTGGCGGTCTTGGCCCTCACGTTGGGCACTTTCACCGTCCTGGAGAACCTTGTTGTCCTCTGTGTGATCTTCAACTCACGCACCCTCAGAAGCAGGCCCTCCTATCACTTCATTGGCAGCCTGGCCGTGGCGGACCTGCTGGGCAGTGTCATCTTTGTGTACAGCTTCGTCGATTTCCATGTGTTCCACCGGAAGGACACTCCCAATGTGTTTCTGTTCAAGCTGGGGGGGGTCACGGCCTCTTTCACCGCATCTGTGGGCAGCCTCTTCCTCACGGCCATAGACAGATATATCTCCATTCACAAGCCCCTGGCGTACAAGCGGATTGTCACCAAGACGAAGGCCGTCATCGCCTTCTGTATGATGTGGGCCATTTCCATTATCATCGCCGTGCTCCCCCTGCTGGGCTGGAACTGCAAGCGCCTCAACTCTGTGTGTTCGGACATTTTCCCACTGATCGACGAGAACTACTTGATGTTCTGGATCGGGGTCACCAGCGTCTTGCTCCTGTTCATCATTTATGCCTACATGTACATCCTGTGGAAGGCGCACCACCACGCCGTGAGGATGCTCAGCCGTGGGACTCAGAAGAGCGTCATCGTGTACTCCTCCGACGGCACCAAAGTGCAGGTCACCAGGCCGGAGCAAACGAGGATGGACATCCGCTTGGCCAAGACTCTGGTGCTCATACTGGTGGTGCTTATCATCTGCTGGGGCCCAGTCCTGGCCATCATGGTTTACGACCTCTTCTGGAAGATGAACAACTTCACGAAGACCATCTTCGCCTTCTGCAGCATGCTGTGCCTGTTCAACTCCACCGTCAACCCCATCATTTACGCTCTGAGGAGCAAAGACCTGCGGCTGGCTTTTCGCAGCACCTTCCAGCTCTGCAGGGGGACAGCCCAGCCCTTAGACAACAGCGTGGAGTCCGACTACCAGAACAGGAACGCTGCCCACAAAGTGGCAGAGAGCTGTGTGAAGTCCACTGTGAAAATAGCCAAAGCCACCATGTCTGTGTCGACCGAGACGTCTGCTGAGGCAGTCTAA

Function

symbol description
cnr1 Predicted to enable cannabinoid receptor activity. Acts upstream of or within several processes, including axon development; methionine metabolic process; and positive regulation of feeding behavior. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in central nervous system; cranial ganglion; digestive system; head; and oocyte. Human ortholog(s) of this gene implicated in obesity; schizophrenia; and type 2 diabetes mellitus. Orthologous to human CNR1 (cannabinoid receptor 1).

NR:

description
PREDICTED: cannabinoid receptor type 1A

GO:

id name namespace
GO:0038171 cannabinoid signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004949 cannabinoid receptor activity molecular_function

KEGG:

id description
K04277 CNR1; cannabinoid receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003613 True 1413 mRNA 0.55 1 11575865 11577277

Neighbor

gene id symbol gene type direction distance location
AMCG00003611 NA coding downstream 7584 11560562 ~ 11568281 (-)
AMCG00003610 NA coding downstream 33220 11528304 ~ 11542645 (-)
AMCG00003612 NA coding downstream 88308 11485010 ~ 11487557 (-)
AMCG00003601 NA coding downstream 197508 11372364 ~ 11378357 (-)
AMCG00003602 NA coding downstream 203808 11371764 ~ 11372057 (-)
AMCG00003617 NA coding upstream 31886 11609163 ~ 11611680 (-)
AMCG00003616 rngtt,LOC107554925,LOC107660510 coding upstream 130280 11707557 ~ 11720740 (-)
AMCG00003619 LOC108427508,LOC101167911,LOC103355980,LOC108270165 coding upstream 289445 11866722 ~ 11878169 (-)
AMCG00003627 ube2j1 coding upstream 363217 11940494 ~ 11957654 (-)
AMCG00003626 rragd,LOC107564985,LOC107693082,LOC107583676,LOC108435430,LOC107755772 coding upstream 381295 11958572 ~ 11976961 (-)
G1935 NA non-coding downstream 189811 11381872 ~ 11386054 (-)
G1856 NA non-coding downstream 524787 11050151 ~ 11051078 (-)
G1744 NA non-coding downstream 1159978 10414938 ~ 10415887 (-)
G1631 NA non-coding downstream 1723527 9852069 ~ 9852338 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding downstream 1724438 9850691 ~ 9851427 (-)
G2044 NA non-coding upstream 155527 11732804 ~ 11863101 (-)
G2052 LOC100846954 non-coding upstream 281644 11858921 ~ 11905671 (-)
G2066 NA non-coding upstream 449642 12026919 ~ 12027158 (-)
G2071 NA non-coding upstream 473968 12051245 ~ 12051491 (-)
G2079 NA non-coding upstream 490772 12068049 ~ 12068258 (-)
AMCG00003595 myo6,LOC106571274 other downstream 458960 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 619512 10951084 ~ 10956353 (-)
AMCG00003587 naa20 other downstream 942753 10625346 ~ 10633112 (-)
AMCG00003573 NA other downstream 1697421 9874670 ~ 9878444 (-)
AMCG00003572 NA other downstream 1710216 9853199 ~ 9865649 (-)
AMCG00003618 NA other upstream 166712 11743989 ~ 11789275 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other upstream 344714 11921991 ~ 11939783 (-)
AMCG00003625 NA other upstream 498042 12075319 ~ 12078152 (-)
G2236 NA other upstream 1457676 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 1494519 13071796 ~ 13116660 (-)

Expression


Co-expression Network