AMCG00003616 (rngtt,LOC107554925,LOC107660510)


Basic Information

Item Value
gene id AMCG00003616
gene name rngtt,LOC107554925,LOC107660510
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11707557 ~ 11720740 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003616
ATGGCACACTGTGGGATCCCGCCTCGATGGCGAAACTGTCCGAGGAGAGGGCAACCTGTGGCAGCTAAATTTCTGCCTATGAAGACGATGCTTGGGCCCAAATATGATGAACTGGTCCCTGAGGAGAACAGATTCCACCCCAGCATGCTGTCTAACTATTTAAAGAGTCTTAAGGTCAAAATGGGATTGCTCATTGATTTAACAAACACATCACGCTTTTATGACCGCAATGAGATCGAGAAAGAAGGCATTAAATACGTGAAGCTGCCGTGTAAAGGGCATGGAGAGTGTCCGACAAAGGAGCACACAGAAACGTTTATCAGGTTCTGTGAACACTTCATGGAGAAGACCCCTACTGAACTCATAGGTGTCCACTGCACACACGGCTTCAATCGGACGGGATTTCTTATCTGTGCCTACCTGATAGAGAAGATGGACTGGAGCATCGAGGCGGCCGTGGCTGCTTTTGCTCAGGCGAGACCTCCAGGCATTTACAAAGCTGATTACCTCAAGGAGCTGTTCTGCCGGTATGGCGATGCTGAAGACGCACCGCCCGCTCCCACCCTCCCAGACTGGTGCTTCGAGGACGAGGAGGACGACCAGGACGATGAAGGAAATATCATTGGTCAAGATTCCGGGCCCAGCTCCTCGGGGTCATTGCcgggcaaaaagaaaaaggaacgGCTAAAACTGGGTGCTGTGTTCTTGGAAGGGGTGCAAGTGAAGGGCGTCACACAAATTACATCTCAGCCAAAGCTTGGTGAAATTCAGAGGAAATGTCAACAGTTCTGCGAATGGGAAAAATCAGGGTTCCCAGGGGCCCAGCCGGTGTCCATGGACAGAAAGAACCTCCGATTCCTGGAGCAGAGCGCCTACAAAGTCAGCTGGAAAGCAGACGGCACTCGGTGCTTGGCTGTACCAGTAAACTCCACGGACCCTTAG

Function

symbol description
rngtt Predicted to enable mRNA guanylyltransferase activity and triphosphatase activity. Predicted to be involved in 7-methylguanosine mRNA capping. Predicted to act upstream of or within dephosphorylation and mRNA processing. Predicted to be located in nucleus. Orthologous to human RNGTT (RNA guanylyltransferase and 5'-phosphatase).

NR:

description
PREDICTED: mRNA-capping enzyme

GO:

id name namespace
GO:0006370 7-methylguanosine mRNA capping biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0004484 mRNA guanylyltransferase activity molecular_function
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004651 polynucleotide 5'-phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K13917 RNGTT; mRNA-capping enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003616 True 942 mRNA 0.52 9 11707557 11720740

Neighbor

gene id symbol gene type direction distance location
AMCG00003617 NA coding downstream 95877 11609163 ~ 11611680 (-)
AMCG00003613 cnr1,LOC104936193 coding downstream 130280 11575865 ~ 11577277 (-)
AMCG00003611 NA coding downstream 139276 11560562 ~ 11568281 (-)
AMCG00003610 NA coding downstream 164912 11528304 ~ 11542645 (-)
AMCG00003612 NA coding downstream 220000 11485010 ~ 11487557 (-)
AMCG00003619 LOC108427508,LOC101167911,LOC103355980,LOC108270165 coding upstream 145982 11866722 ~ 11878169 (-)
AMCG00003627 ube2j1 coding upstream 219754 11940494 ~ 11957654 (-)
AMCG00003626 rragd,LOC107564985,LOC107693082,LOC107583676,LOC108435430,LOC107755772 coding upstream 237832 11958572 ~ 11976961 (-)
AMCG00003629 LOC104963585,LOC104944503 coding upstream 358728 12079468 ~ 12130611 (-)
AMCG00003631 NA coding upstream 435627 12156367 ~ 12176632 (-)
G1935 NA non-coding downstream 321503 11381872 ~ 11386054 (-)
G1856 NA non-coding downstream 656479 11050151 ~ 11051078 (-)
G1744 NA non-coding downstream 1291670 10414938 ~ 10415887 (-)
G1631 NA non-coding downstream 1855219 9852069 ~ 9852338 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding downstream 1856130 9850691 ~ 9851427 (-)
G2044 NA non-coding upstream 12064 11732804 ~ 11863101 (-)
G2052 LOC100846954 non-coding upstream 138181 11858921 ~ 11905671 (-)
G2066 NA non-coding upstream 306179 12026919 ~ 12027158 (-)
G2071 NA non-coding upstream 330505 12051245 ~ 12051491 (-)
G2079 NA non-coding upstream 347309 12068049 ~ 12068258 (-)
AMCG00003595 myo6,LOC106571274 other downstream 590652 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 751204 10951084 ~ 10956353 (-)
AMCG00003587 naa20 other downstream 1074445 10625346 ~ 10633112 (-)
AMCG00003573 NA other downstream 1829113 9874670 ~ 9878444 (-)
AMCG00003572 NA other downstream 1841908 9853199 ~ 9865649 (-)
AMCG00003618 NA other upstream 23249 11743989 ~ 11789275 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other upstream 201251 11921991 ~ 11939783 (-)
AMCG00003625 NA other upstream 354579 12075319 ~ 12078152 (-)
G2236 NA other upstream 1314213 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 1351056 13071796 ~ 13116660 (-)

Expression


Co-expression Network