AMCG00003618


Basic Information

Item Value
gene id AMCG00003618
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11743989 ~ 11789275 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003618
TATAAAGAGGCCATTCTGGTGGTGATCCACCACACTCACAACCCGGAGCTCATTTTGGCTGAGAGCAGCTCTCTGGTGAAGAACAGGGCAAACATAGTGGGAACTGTGGACTGTCTGTTCCATGAGACTGTGGGATTACTGCAGTGTGGAGTCAACACCCAGGCTGTGAAACGGtttaaggACATGCCACTAAAagTTAAAGTCTATATCAAGATCACTGGAGTTACCCATGATGCTGAGAGTGAGTTTTTAAAGGGAATCAGAAAGTATCAGAGGCTTAAACAGTGCAGTATGGTGGAGTGCACAGTGATCCTGGTCTTCTGTCCTGTTGCCTCTTGCATACAGACTGATATTGATGCAGCCATTCAGAATATTCCAGTCAATAAGGAGGCCATTCTGGTGGTGATGCACCACACTCACAACCCGGAGCTCATTTTGGCTGAGAGCAGCTCTCTGGTGAAGAACAGGGCAAACATAGTGGGAACTGTGGACTGTCTGTTCCATGAGACTGTGGGATTACTGCAGTGTGGAGTCAACACCCAGGCTGTGAAACAGGTCTCTGACATCTTAAAACCATATACTGCACATGTTTCAAATAATCCGAACTGTGCTTTA
>TU2465
NNNNCAACAGTGCGGTATAGAGGAGTGTGCAGTGATCCTGGTCTTCTGTCCTGTTGCCTGTTGCATAGAGATTGATATTGATAATGCCATTCTGGATGTTCCAGTCAATAAGGAGGCCATTCTGGTGGTGATGCACCACACTCACAACCCGGAGCTCATTTTGGCTGAGAGCAGCTCTCTGGTGAAGAACAGGGCAAACATAGTGGGAACTGTGGACTGTCTGTTCCATGAGACTGTGGGATTACTGCAGTGTGGAGTCAACACCCAGGCTGTGAAACAGGTCTCTGACATCTTAAAACCATATACTGCACATGTTTCAAATAATCCGAACTGTGCTTTAATGTAAGTAGGTATACCCAGTGTGCCAGCTGTTAATTAATGTCTATCTCTGTATCTAGTCTATCCATACATATTCACATGTCATTTCAGCATATTCAGAGTGCATGTCAATGTTACTTTGAAAGTTCTGCCAAGTGATTTAAGCTGTGTTTATTGTAAGTGAAATAGTGTGTATTTCATACgtatattgtgtattatttggATGTTTTAACCATTCTCaaagaaattgaatatttaagtGGTGCACATTGATATTTCTTAtcatttgtcttgttttgtacATCCTTCATGTGTCAACATCTTCACTCTTCAACCACCACCATATAAAGTGTTTGAAATAATCattaaagaaagtaaaaacatCATG

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003618 False 615 mRNA 0.47 4 11744355 11750811
TU2465 True 706 lncRNA 0.40 2 11743989 11789275

Neighbor

gene id symbol gene type direction distance location
AMCG00003616 rngtt,LOC107554925,LOC107660510 coding downstream 23249 11707557 ~ 11720740 (-)
AMCG00003617 NA coding downstream 132309 11609163 ~ 11611680 (-)
AMCG00003613 cnr1,LOC104936193 coding downstream 166712 11575865 ~ 11577277 (-)
AMCG00003611 NA coding downstream 175708 11560562 ~ 11568281 (-)
AMCG00003610 NA coding downstream 201344 11528304 ~ 11542645 (-)
AMCG00003619 LOC108427508,LOC101167911,LOC103355980,LOC108270165 coding upstream 77447 11866722 ~ 11878169 (-)
AMCG00003627 ube2j1 coding upstream 151219 11940494 ~ 11957654 (-)
AMCG00003626 rragd,LOC107564985,LOC107693082,LOC107583676,LOC108435430,LOC107755772 coding upstream 169297 11958572 ~ 11976961 (-)
AMCG00003629 LOC104963585,LOC104944503 coding upstream 290193 12079468 ~ 12130611 (-)
AMCG00003631 NA coding upstream 367092 12156367 ~ 12176632 (-)
G1935 NA non-coding downstream 357935 11381872 ~ 11386054 (-)
G1856 NA non-coding downstream 692911 11050151 ~ 11051078 (-)
G1744 NA non-coding downstream 1328102 10414938 ~ 10415887 (-)
G1631 NA non-coding downstream 1891651 9852069 ~ 9852338 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding downstream 1892562 9850691 ~ 9851427 (-)
G2052 LOC100846954 non-coding upstream 69646 11858921 ~ 11905671 (-)
G2066 NA non-coding upstream 237644 12026919 ~ 12027158 (-)
G2071 NA non-coding upstream 261970 12051245 ~ 12051491 (-)
G2079 NA non-coding upstream 278774 12068049 ~ 12068258 (-)
G2140 NA non-coding upstream 598333 12387608 ~ 12387931 (-)
AMCG00003595 myo6,LOC106571274 other downstream 627084 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 787636 10951084 ~ 10956353 (-)
AMCG00003587 naa20 other downstream 1110877 10625346 ~ 10633112 (-)
AMCG00003573 NA other downstream 1865545 9874670 ~ 9878444 (-)
AMCG00003572 NA other downstream 1878340 9853199 ~ 9865649 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other upstream 132716 11921991 ~ 11939783 (-)
AMCG00003625 NA other upstream 286044 12075319 ~ 12078152 (-)
G2236 NA other upstream 1245678 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 1282521 13071796 ~ 13116660 (-)
AMCG00003667 NA other upstream 1875468 13664743 ~ 13732039 (-)

Expression


Co-expression Network