AMCG00003625


Basic Information

Item Value
gene id AMCG00003625
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12075319 ~ 12078152 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003625
ACTTGAACATAAACACGTTGTTCCGAATGGCAGCTTCAATGATACCTCCAACAGCACTGAGTCTGAAACAGTTCTTGCAGCGGCAGAAGGTCCTCGGTCTGTACAGGAGCATGTTGAGGACCATCGCCCGGGTGCCCAACGATGCGGACCGGCAGTACCTGAGGCGCTGGGCCAGAGAGGAGTTCAAGAGGAATAAAGATGCCACCGACCAGGATGTGATTCGTATGATGGTTACACAGGCGAACATGCACCTTCAGGATCTTCAGAAAACCCTGGCCCTGGCAAACAGCTAGTACTGCAGCATGCCGCCTGATACAGCAGCTCCCTGAGACACAGACTCATGCACTACGGCATGGCCAAGACCGTCACAGCAGCTCAGCCTGTGGGAATTGTTACCCGGACCTTCCAGTTGATATCAGTGGCGGATTTTATGGCATCTAGCTTTTTAAATCTAGTTCTACAATACATTCAAGTAagttattaaatacattaaaatgactCCTTAACATAATAAACATTGCCTGGCCCTTTCTGACCTGGACTTTACACCCTGGaatgatacatttcaaaattcatGTCAAGTGTGTGGATGGGTGGGTGAGGAATTTTATTATGATGCTCtgtagtctgtttttgtttggtggtacaggtttgtaatgtACCACATACATAACAATGCCTAAACACTGAACAAAATAGTGGCCTCTTCTCATACCTACGTCTCATCTTTGTTCAGTTGTTTCCTCTGCAAATATTATTGCAGTCTTGTCTGCCTATTTCTAATGTCACCCTGCCTACCTTTATATGGTGTACACAAATAGTAAGGACTGGAAAGCCTGCCTGGTGTCGGAGTCATTctcactatttaaaaaatgtaatttatgtctACAAGGCACTATCTGGTCTTGCGCCCCAATATATCAGTGATCTTTTACATCCTTATTCCCCTGTCAGAGTGCTTAGGTCTTTCATTGTTGCTATAGATCTAAGGGCGATCGTGCATTTTCTGTGATAGATCCTAATCTCCCTTTCCATGTGAGGTCAGCATCATTagccatttttaaatcttctttaaaaacatatttttactgaatagattattgaatatttcgaaatggatacattttatgATGCTGTATTCCACATTTTTACTCTGTTTTTTTGTTCGTTTcatctgtaaagcactttggctcaacttttgttgtttttaaatgtgctctataaataaaggttgacttgacttgactgcTGAAACAGACAAGTAACAAGTAACTGTCActgactgtagggatggtaaTGCGCCAGGTTTGCTAGCTCTGGCTCCAGAGCTTCAGCTCCAGCTGCGGgccggctccagcagcccctCTCCAGCTCCCGAGCGGCTCCGGTGCAGCTCCAAACAGCTCCAGCGCCTGCTGCTTTTAAACAGCTCCAGTGCCACCAAAAACTACAAACTTGGATGGgatcattatttatgttttaagttgCTTTGCTCTACATTTTCTGAGACGATAAAAGTTTTATTTactcttttttactttttttgtgtaaataacttttaacaaaaccaaaatattagtaacataaatgtttgtttaaccattcaaacatgaaaaagaagaaaatcgTACAATAAAGATGTCTGGCAATTAGAGTTGCCATCTGGCCAGTATTTTACTGGACTGTCTGGTATTTTGTCGTTGTTTGGAAGATGTCCGGTTATGTAAAGCACTATGTACTGTGAATGTAGCAGGTGTACTGGTGCGGTACTAGCGCACATATGCTGACTCGTGCTTtggcattgtgtttatttattcttcaatTGAAATATATGTCTATGggatatgtaattaaaaatgttattagtGTAAAGTTTGCCCTCCATTTGCCCATCGTGGTCAAATTGCCAGCAACCCCCTTTGGTAGGCGTTTCGCCAGCCACACACCCCACACCACagtaaagccttcagaggttatcccTCCCAATATCACCtgcagttattttaatggataatttcaatagcaaagtcgACAGTATTAGAAATCAGATAGAAttggaaaaatacacaaatactatagctgatgcatgcagtccttcactGGCCCTGCCTACCTTAGACTAATTTAATGCAGTAAATCATCAAGAATTAGTccccttaattactaaaatgaaaactacaacct
>TU2508
GGAGTTTAAGGGTGATTAACACTTGAACATAAACACGTTGTTCCGAATGGCAGCTTCAATGATACCTCCAACAGCACTGAGTCTGAAACAGTTCTTGCAGCGGCAGAAGGTCCTCGGTCTGTACAGGAGCATGTTGAGGACCATCGCCCGGGTGCCCAACGATGCGGACCGGCAGTACCTGAGGCGCTGGGCCAGAGAGGAGTTCAAGAGGAATAAAGATGCCACCGACCAGGATGTGATTCGTATGATGGTTACACAGGCGAACATGCACCTTCAGGATCTTCAGAAAACCCTGGCCCTGGCAAACAGCTAGTACTGCAGCATGCCGCCTGATACAGCAGCTCCCTGAGACACAGACTCATGCACTACGGCATGGCCAAGACCGTCACAGCAGCTCAGCCTGTGGGAATTGTTACCCGGACCTTCCAGTTGATATCAGTGGCGGATTTTATGGCATCTAGCTTTTTAAATCTAGTTCTACAATACATTCAAGTAagttattaaatacattaaaatgactCCTTAACATAATAAACATTGCCTGGCCCTTTCTGACCTGGACTTTACACCCTGGaatgatacatttcaaaattcatGTCAAGTGTGTGGATGGGTGGGTGAGGAATTTTATTATGATGCTCtgtagtctgtttttgtttggtggtacaggtttgtaatgtACCACATACATAACAATGCCTAAACACTGAACAAAATAGTGGCCTCTTCTCATACCTACGTCTCATCTTTGTTCAGTTGTTTCCTCTGCAAATATTATTGCAGTCTTGTCTGCCTATTTCTAATGTCACCCTGCCTACCTTTATATGGTGTACACAAATAGTAAGGACTGGAAAGCCTGCCTGGTGTCGGAGTCATTctcactatttaaaaaatgtaatttatgtctACAAGGCACTATCTGGTCTTGCGCCCCAATATATCAGTGATCTTTTACATCCTTATTCCCCTGTCAGAGTGCTTAGGTCTTTCATTGTTGCTATAGATCTAAGGGCGATCGTGCATTTTCTGTGATAGATCCTAATCTCCCTTTCCATGTGAGGTCAGCATCATTagccatttttaaatcttctttaaaaacatatttttactgaatagattattgaatatttcgaaatggatacattttatgATGCTGTATTCCACATTTTTACTCTGTTTTTTTGTTCGTTTcatctgtaaagcactttggctcaacttttgttgtttttaaatgtgctctataaataaaggttgacttgacttgactgcTGAAACAGACAAGTAACAAGTAACTGTCActgactgtagggatggtaaTGCGCCAGGTTTGCTAGCTCTGGCTCCAGAGCTTCAGCTCCAGCTGCGGgccggctccagcagcccctCTCCAGCTCCCGAGCGGCTCCGGTGCAGCTCCAAACAGCTCCAGCGCCTGCTGCTTTTAAACAGCTCCAGTGCCACCAAAAACTACAAACTTGGATGGga

Function

GO:

id name namespace
GO:0016592 mediator complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003625 True 2184 mRNA 0.41 3 12075319 12078132
TU2508 False 1485 TUCP 0.60 3 12076038 12078152

Neighbor

gene id symbol gene type direction distance location
AMCG00003626 rragd,LOC107564985,LOC107693082,LOC107583676,LOC108435430,LOC107755772 coding downstream 98358 11958572 ~ 11976961 (-)
AMCG00003627 ube2j1 coding downstream 117665 11940494 ~ 11957654 (-)
AMCG00003619 LOC108427508,LOC101167911,LOC103355980,LOC108270165 coding downstream 197150 11866722 ~ 11878169 (-)
AMCG00003616 rngtt,LOC107554925,LOC107660510 coding downstream 354579 11707557 ~ 11720740 (-)
AMCG00003617 NA coding downstream 463639 11609163 ~ 11611680 (-)
AMCG00003629 LOC104963585,LOC104944503 coding upstream 1316 12079468 ~ 12130611 (-)
AMCG00003631 NA coding upstream 78215 12156367 ~ 12176632 (-)
AMCG00003632 NA coding upstream 178317 12256469 ~ 12283492 (-)
AMCG00003638 epha7 coding upstream 504985 12583137 ~ 12595386 (-)
AMCG00003635 epha7,LOC107567608 coding upstream 540634 12618786 ~ 12624689 (-)
G2079 NA non-coding downstream 7061 12068049 ~ 12068258 (-)
G2071 NA non-coding downstream 23828 12051245 ~ 12051491 (-)
G2066 NA non-coding downstream 48161 12026919 ~ 12027158 (-)
G2052 LOC100846954 non-coding downstream 169648 11858921 ~ 11905671 (-)
G2044 NA non-coding downstream 212218 11732804 ~ 11863101 (-)
G2140 NA non-coding upstream 309456 12387608 ~ 12387931 (-)
G2142 NA non-coding upstream 339776 12417928 ~ 12418336 (-)
G2168 NA non-coding upstream 791349 12869501 ~ 12869951 (-)
G2196 NA non-coding upstream 820279 12898431 ~ 12901945 (-)
G2234 NA non-coding upstream 953776 13031928 ~ 13032764 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other downstream 135536 11921991 ~ 11939783 (-)
AMCG00003618 NA other downstream 286044 11743989 ~ 11789275 (-)
AMCG00003595 myo6,LOC106571274 other downstream 958414 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 1118966 10951084 ~ 10956353 (-)
AMCG00003587 naa20 other downstream 1442207 10625346 ~ 10633112 (-)
G2236 NA other upstream 956801 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 993644 13071796 ~ 13116660 (-)
AMCG00003667 NA other upstream 1586591 13664743 ~ 13732039 (-)
G2373 esrrg other upstream 1931306 14009458 ~ 14013021 (-)
G2500 NA other upstream 2732634 14810786 ~ 14811331 (-)

Expression


Co-expression Network