AMCG00003627 (ube2j1)


Basic Information

Item Value
gene id AMCG00003627
gene name ube2j1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11940494 ~ 11957654 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003627
CGGATTAtaaataaagttttgtttttcaaaatcgTCTTCAGTTCCTGTTTTCCGTGTTTTCATGTGACATTTTCGTAAATCGACAGAAGGTGAAAGCAAACCTGTCACCGTCCCATGAACGAAACTAGGAGGATCTACACATCTTATGCCACGTCAGGACATGTAAATTAACAGCACAGTCGCCACCACACGATAAGCAGACGACATGTCTGTGTAGCGCACTGCTTCTCTGGCCGGGCTATGGGAACTTTTCGGTaccagaaataaacaaacaaaaagtgacaCTTGGAAATCGCTCGGACCAAAGCGGGCTGGACTCCGTGAGCGCCAGACGTACGGGCTCCCGGTTTTGCCGTGTCCATCTGCACAGGTAGAGATGGAAAGCAAGTACAACCTCAAGAGCCCCGCTGTGAAGCGGCTGATGAAGGAAGCAGCTGAACTCAGGGATCCGACAGAACATTACCATGCACAGCCCTTAGAGGATAATCTTTTTGAGTGGCATTTCTCAGTACGGGGGCCTCCTGACTCTGATTTCGACGGTGGCGTGTATCATGGGAGAATAGTACTTCCTCCAGAATACCCTATGAAGCCTCCCAGCATTATACTCCTCACCTTCTTCTTTCAGCCCAATGGAAGATTTGAAATTGGCAAGAAGATCTGCCTGAGCATCTCAGGACACCACCCCGAGACCTGGCAGCCCTCCTGGAGCAtcaGAACTGCTCTAATAGCTATTATCGGATTCATGCCCACCAAAGGAGAGGGTGCAATAGGTTCTCTTGATTACACTCCTGAGGAGAGGAAAGCACTGGCCAAAAAGTCCCAGGACTTCTGCTGTGAAGCTTGTGGCTGCACCATGAGGACTGCTCTGCTTCCTCCCACCTCCAACAGCAACCCCAGCCAGGAGGACAAGGAAGCCAAAGAACTAGCCAGACAGATCAGCTTTAAGCTGCCAGCAGAGTCAAGTACATCCAGTAAAGCTGACCAGAGCCAGGGAGCAGAGAGTGAGCCCCCCTCTGAGTCTGAGATGCTGCCACAGGCCTCTGCATCAAGGGAACAAGCAGCAACGGCCGCCACTGCCCAGCCTGACCAGGCTGAAGCTCAACCTGCCCCCAGCGAAGAAGCCCCCCCGGCCATCCCCAGCAGCCGTCCTCTGAGTCCCCGGCAGCGACGTGCCCAGCAGCAGACGCAGCACCCCCGGAGGCCAGCCTCGCCCGCCTTCCCCCCGGCCCAGCAGCGCGCTCCGGATGCCAGTCACACCGGCTCAGCCATCCTGATCGTGGTGCTCACCCTTGCCCTGGCAGCCCTCATCTTCCGCAGAATCTACCTGGCCAACGAGTACAAGTTTGATTATGAACTGTAGCCCCCCCGCTGTGCTGCATCCCTCCCACAGCCCAGATTGGACACATTACAGCAGCTTCTAATCCTGTAGACTATTATATCATCAGTTGGTTTAGAGCTGTGTTTTTAGGTGGCTTTCAGGCAGTAAGTAAAGAGGATTTGCCTCCACTGTTTTGTCTACACTATTGGTGTAACTTATCAATCTGAAGATGAAGGTCAAAGAAGCAGACAAccttcttatgttttttttgtttttcccaaacTCTCACAAAgcaggagggaaaaaaaaaacattaaaatctgtCTGTCTTCTCTGCCTGTCGCTTAACATGCTCTTAAAATTAATCACTTTACGTATTGCAAATCTGTATATTAACTTTGAACTGCGTGCTTCCAAATGTTTActtagaaatattaaatattaaacagctGAAAATAAAGGTTCATCATTGgtagcctttttttttcccctacttATTGTGAATCAGTGCTCTTCAGTTGTAGTGTAGCAGTCTGGGAATGTGACATGGACTGGAGGCCTGGCAGTGCGTGTGTctggtttttctttttgtttgcatgcgtgtgtttgtttgtcgGTTCCTTGTGTCAGGGGTGGGGCAGATCGATTGGGGAGCAGATTTGATGAGTGGGAAATTATGGTGGCTTCCGGGGTCAAAGGCTGGCCCCGTGTGGGAAAGGGTGGGGCAGGGGCATAGATATATATCCGGGTTCCCCGGTCCCTCAGGGAGATGAGAATTGGATTTGGAGTGAGACTAATGCCTCCAGGCCCTCACAGTATGTATGGGTGTTTAAACCGTGAAATTCTGGCCTCGTTACATATCTGAATCTGGCTCCTGGGCGGGGGTTATGGGGACTACAAAGATACTAGTTACTAAACCAAAGGGCTCtcaagttttaaatgcatttatttctcactatagaattattattgttttacttttgccATGATTTTCAACCATGTATTTCAGTaggtaaaacacaaaaatgcaaaaagacaCAATCAAAACATTGTGATCCGTCATAGGAATCGACAATTTCACTATCTTTCACTGCCACATACATAATGCGTCATTGACTTGCTACTCAGCACATTCATTATGCGTAACGTCAGTCGCTCGGCTCACCTTTTAATAATGCGAGCCCAACGTGCCGAACCATACCAGGCAGGCACGGTGCGGCCCTGGCTTGGCTCGTGTATGCTAGTGTAAACCCAGCAGAAGTGTGGTGTGGTGTTGCTCTGCATGAACCCCGAGTcttgttatttgttgttttcttcaagcCAGTGAATCCAAGTCACAAGAAGCCTAGAATGCTACAGTAGTAAATCTCTTACATTTTTTATCAGAATTTATATTGCCAATATTCTTTCATTCTTATCTTCTTTGCAAATCCAAGAGTTCATTACAGAATGGAGCATAAGCAAGTGCTCGATGTGATAACACAGAAGCCTGACTGAAGGATTGTAAGGTCAGTCTTTTGAAATGAGGAAATTAAAAGAACAGTGTCAGTGCTTAGGCATGAGTCTGTCCTGAGCTAGAGAGGGATTTACTGCCTAATAGtggatgtttaaaaatatataataataataataaacggcATTATCACTGGGTGGcatggtggcacagtggttagcacagctccagggtcctgggtttgagtccctgcttggggtgcctgtctgtgtggagtttgcatgttctccctgtgtcagcgtgggttttctccgggcactctggtttcctcccactgtgggttaggttaattggcttctctaaattgctttgtgtgtgttgaccagtgatggactggcatcgtgtcctgggtgtattcctgccttgtacCATATGCCTTCCAGGatcagctccagcttcccctgcaaccctcaccaggataagtggttttgaaaatggatggatggcaTTATCACTTAAATCAAGAGTGTATGTTCTAATTGTTTTAATCGTGTATGTCCATCATTGCAATGCAACttgcacatttttgtatatatttaaatatgtatatgtgaagTGTAATAAAG

Function

symbol description
ube2j1 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Orthologous to human UBE2J1 (ubiquitin conjugating enzyme E2 J1).

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 J1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10578 UBE2J1, NCUBE1, UBC6; ubiquitin-conjugating enzyme E2 J1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003627 True 3397 mRNA 0.47 8 11940494 11957654

Neighbor

gene id symbol gene type direction distance location
AMCG00003619 LOC108427508,LOC101167911,LOC103355980,LOC108270165 coding downstream 62325 11866722 ~ 11878169 (-)
AMCG00003616 rngtt,LOC107554925,LOC107660510 coding downstream 219754 11707557 ~ 11720740 (-)
AMCG00003617 NA coding downstream 328814 11609163 ~ 11611680 (-)
AMCG00003613 cnr1,LOC104936193 coding downstream 363217 11575865 ~ 11577277 (-)
AMCG00003611 NA coding downstream 372213 11560562 ~ 11568281 (-)
AMCG00003626 rragd,LOC107564985,LOC107693082,LOC107583676,LOC108435430,LOC107755772 coding upstream 918 11958572 ~ 11976961 (-)
AMCG00003629 LOC104963585,LOC104944503 coding upstream 121814 12079468 ~ 12130611 (-)
AMCG00003631 NA coding upstream 198713 12156367 ~ 12176632 (-)
AMCG00003632 NA coding upstream 298815 12256469 ~ 12283492 (-)
AMCG00003638 epha7 coding upstream 625483 12583137 ~ 12595386 (-)
G2052 LOC100846954 non-coding downstream 34823 11858921 ~ 11905671 (-)
G2044 NA non-coding downstream 77393 11732804 ~ 11863101 (-)
G1935 NA non-coding downstream 554440 11381872 ~ 11386054 (-)
G1856 NA non-coding downstream 889416 11050151 ~ 11051078 (-)
G1744 NA non-coding downstream 1524607 10414938 ~ 10415887 (-)
G2066 NA non-coding upstream 69265 12026919 ~ 12027158 (-)
G2071 NA non-coding upstream 93591 12051245 ~ 12051491 (-)
G2079 NA non-coding upstream 110395 12068049 ~ 12068258 (-)
G2140 NA non-coding upstream 429954 12387608 ~ 12387931 (-)
G2142 NA non-coding upstream 460274 12417928 ~ 12418336 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other downstream 711 11921991 ~ 11939783 (-)
AMCG00003618 NA other downstream 151219 11743989 ~ 11789275 (-)
AMCG00003595 myo6,LOC106571274 other downstream 823589 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 984141 10951084 ~ 10956353 (-)
AMCG00003587 naa20 other downstream 1307382 10625346 ~ 10633112 (-)
AMCG00003625 NA other upstream 117665 12075319 ~ 12078152 (-)
G2236 NA other upstream 1077299 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 1114142 13071796 ~ 13116660 (-)
AMCG00003667 NA other upstream 1707089 13664743 ~ 13732039 (-)
G2373 esrrg other upstream 2051804 14009458 ~ 14013021 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032481 zgc:65895 coding NC_007117.7 CM002890.2 59967994 ~ 59972559 (+)
grasscarp (Ctenopharyngodon idella) G685188 NA unknown CI01180000 null 10819986 ~ 10866176 (+)