AMCG00003628


Basic Information

Item Value
gene id AMCG00003628
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12132846 ~ 12144928 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003628
ATGGAAGGTAATTACCTTGATGAAATGTATGGTGACTTCAATCGGGGTCCTTCTGACTCGCCTTTAGCCAGTGATGACAATTCAGTGGATATTTATTCGGGGCTTGACAATGAGAACAGTCCACATCCCAGTGGCGGCACAGAGAAATCGAGGGCGTTGTTTTCACCAAAAAGGCTTAAGGACTCTCTAGACTTGTATGAAGAAATCCTCACTGAAGAGCAGAAGGAACGGGAAGCCACCTACAATGACaacttacatttacataatgaaaacacacatcTAAAGAAGAACATATGTGCTCTCATTAAAACGGCTCGGATGGAGATTGTCCGCAAGGATGATGAAATCAACAGACTTAATCAAAGatCTGTCCGAGGTGGATTTGGTCAGTCTTTCCCTAGACCACTGTTCAGCCAGCAGAGGAATTGCATCACTAGGCCGAGCACAGATACTACTGGGACAGCTAGCACAGCTGAAGTTCGTGAACCCAGGGTTAACTGTGCTACGAGAGACGGAAATCAACAATCGCTAAAGGACAGACATGGTTTTGTTCAAACATGTGGAACTTCAGTTGTAGATGCCTCAAATCCAGGTCCTGGCTctcataaaaacatacaacttCCTACTGACTCTTTGACATCCAATAATCAGTGTAGTCCTGCTGGTACTAACTGTAAAAAAGATTCCAGGAGCCTGGAGCCTCTATCCAGAGAAGAACCTGGTCAGAACAGCAAATCCTGCTTGGAAAATATTGAAAGACGACAAAATGTTACCCAGAAACGTTCAACAGAGCCCCAAGAAATCAGAGACGCAAAACACAGACACCACGAGGAAAGAAGTCGCAGGACCCGGGCTGATGGTGACTGTAACAAAGAAGGTAAaacgagagagagggaaaaaactGCCAGAGAGCATAAAGAGTCTGAAAAAGATGGCACGAAATCCAATCGAAGGAGAAATCAGTACCTGGAGAGAGATTTGGAGCCTCCTAGGAGGTCTGGGAGAGGGAAAAGCCCTACCCTAGATTGTTCACAGCGTACAACTACCAGTTTGCACAGTTCAAAGAATCGGGCCAGAGACAGTGAGGTACAGATGAGAAGTAATAGTCAAGATCAGGAAAGGTGTGACAAGAGGGTCCATGAATCCAGTGGCAAAGAAGGAAAGCGCACAACTAGCTCTCACCAAAGTCGCCACAGAGACAAATGTTTAAGTGCCTCCTCCAGTCGGAGAGGAGACCGAAGTCCCTTGAGAGAGGACCACAGGAAAGAAGAGAGGAGGCGAGATGAAGAGAAGAAGGGCAGACAGGAGAAAAGCAAGGAGCAAGACCGAACAAGCGAGAAGACAAAAGACAGAAGTGAAAGCAAAAATGACGAAGAGAAAAAGCAATCTGAATCCCATGTTAAATCTAGTAGCCACAAGAATGTCTCTGTGCCTGGCAAGCTGACCAATCCAGATAATACTGCCGCCAGAAAAACAGCTGCAGAGAAGAAAATCCCACCTGCCGAGAAAGACAGTCCGGAgaagtgtttttcagagtcGGATATCGTCAGTGTCAGTGAAGGGAATCCTGTAAAAAGAGCCGAAGAAACTAGTTCGGTTAGGAAATTAAGTTTCATGGAAACTCTAAATCTTACTCTTTCACCTGTGaagaaaccaaaacagtcaTCTGAAAACCAAGATGAGGGTATCAGCCATTTAGAAGAGGGTCCTTTGGAGGGTCAGGAGAAAGAATCTAGTCTGTTTGATTTAGAAGAAAATTATTGTGTTATAGATGAGGTTGAAACAAGCTGTGAGTCTGTAGAACATAGCAACGAGGTCTTGGCTGTTCCGGGTGAAAGCTCTGTGTCTGTAAGTCCCATTGAGGAATCTCTACACAGCGATCCTGTGAATGATGGAAAGGAACCTTTGACATCTGCTGAAAGCGGTCCAGTTCAGACTCGGACAATAGAGTCTGAAGATGGAGGTCAATTGGATCAGGGGATAGTAACAATGAGTGTGGAAATGGAAGTACCTACTGAAACTGTAGAGCTTGAGGCTAAAGGTACTGGATTAGAGAGTACCCTCAGTCCTAAAGGTTCTGACACAACCCCAGAAACTGAGGCCCCTGAAATTCTTTCACACCTGCCCAACGAGTCTGTTAATGCTGATGCCCCAAATAATGGATCTGATACTGTAAATAAAGTTGCAGATCAAGTTAAGGAGTGTACTTCAATCGCAGAAATTGACAAACCTTCGGTTACCGAGACCAGGGATGTAGAAGCCAATGATACCGTAGCTGAAATTACTCAAAATCTGTCGGATGTCACTCTGGAGAATCCTGATGAGCATGATAATGGTGTTCAGATGAGTATAACAGCTGTCCAGAATCAGACAGgtttattaaataatgcatcCAGTGCTACTACCGGTCCTCAGGATAATCTAACAAATCGAGAAGATTGTGATATGTCCACAGATACAGTGTCCAGTACTGTTTGCATAGAAACAGAACCCCAAAGTGTAAATATTGAAGCAGTTTCAGATAACCTAGGAACTGTTGTTTCAAGTCTAGATCCTGAAAAAGCAGGAGAAAAAGACGAGTGTGACACAAACTTCAGCCCCCGAACAACAGAGATATCGAAAGTGAGCAGCACGTTGGGTAGTGAGATTGTGTCCGCTGATCAGGGTCCCGGCAGCTCCCCGAAGGCACAGGAATCTAACCAAACCCCGGCAGAGACGGAGAAGACCTGCTGTAATTCAGAGCCAGACTCTACGGAAGCAGAGAAGATGACTGTCGAGCCGTCGCCATCCAAGTCGCTTCCAGGCCGGACAATAGAGCTCGAACTTCACGATGAGGATTCCATGATGGTTTCCCTGAAAAGCATCCGGCACATATCTGAAGTCATCAGCCCTCTCACGAGTCCCATTCGTCCTATGAGGAAAAGCCCCAAGCATGTCTCTGCTGTCAAACTGCCTTATGTCAAGAGCCTGAGCAAAGATCTCTCCAGTGTGACTGAGGACTTCAGTTTAAATTCAACAATGATGGGAGTGAACAAGGAGAATCAGAAACCAGAATTCAGCTCCACAGAATGTGCCAAAAAGGACTCTGACAAACTCCCATCCTCTtctgaagaggaggaggaggaggaggaggaggaggaggaggatgaaataGAGGAAGGAGAAATCATTAGTGACAGCGAAGGTGAGGAGCTGCCAGTCATCATCAGTCCTCCGCACAAGAATGCGAGTCCAGGCAACAATGTAAGAAAGGTACCGAGTCCGAAAGCTGACACGCTAGGCAAGAGGCAACATAACAAGTCATCTGTTACTCAGGGCAGCTctggaaagaaaagtaaagtgaCCTCTCCTCCAGTTAACAGTTCGCCTTCAAACAAAAGACGCTTTCGAACTGTCTTGCCATTTTTGCCCAAAACAGACCCATCCAGTATCCAAGATGTCATGGACATGTTAAAATTTATACGCAAACAGATCCGGAAAAAGTACATGAAGCTTCAGAAGAGCTTTCCAGTTAAAACCTTCTACAGCATCATTGACATGTCTCTTTGGGAGTTTACTGACTTTGTCAATAATCTGAACTGTACCAAATTGTGTAATtctgagaacattttaaaaccaaagctGTGCAAAATCATCTCAGCCACTCTGAAGAAGATTTCTAACAATGGCATCGTCAACCGCATCTTTGAACAGCAATCTCCCAACCTGAAGAAAAAGCTGTGGATGTTTGTTGAAGATCAGTTTGACTTCTTATTTAAAGAACTGCAGACAAATCTAATTTCCATGTGCAAATCTGGTGACCTGGTAGAATCATCAGAGGAAGGAGGAAAGCaagaagcaaagaaagaaaaggacagGAAAAGGAAAGCGCACACACGTCCAGTTGAATCGCTGCAGCCCCCAGTCAACATTGCCAAAAGAAATGTAGTGGAGTTGACATCAAAGGACGCACCTGAAATGCCTGCTAAAATTAAGTCCCCAACCAAAATCTCTCTGAAAACTGGTTTAGGGAGCAGGGGCAAAAACCTCAGATTGGCCATGGAGACTGATTCTCACAAGCCAGAGGCACAATTAAATGGTTGTCCTGAGCAAAACCAAGACCTCCCAGGTCTTGGCAAACCCTCTACTGTTACTCCATcgaaaaatgtttctttaatagGAAGCTCAGCACCAAGCATCGGCCATGCTTCAGTACATGATAAATCAGACTTTGAAATCCTCACTGAGCAGCAGGCATCTAGCCTGACTTTCAATCTTGTCACAGACTCGCAGATGGGTGAAATCTTTAAGTGTTTGCTTCAAGGCTCGGACCTTTTGGAGCAAAGTGTTCCTGGAGGAGATAACCACGGCTGGCCGATTGGTACACCTCGAAAAGAAGCACCTTGTGAGGAGAGTTTGCAGGGGCCATCAACTCCACACAGGGCTTTAATGGCATTGAGAACTCCAACAGGTGTCCCTTGGTCAACCGTTACACCAGAGAAATTCTCATCTTTTAGCACTAGAATAGGTGTTCCCTTGAACCCAGCTGCACTGGACGAGAGCTGCATGTTAGAAGTCCCTTCCAATGTGCCCTTTCATAAAATGGTGCCGTCCACTCACATTATCCAGAGACCTTATTCACTTTTGGCTGAAGATCTGGCAGTCTCTCTCACCATCCCCTCCCCCCTCAAATCGGATGGCCACTTGAGCTTTTTGCACCCTGTAAACGGAGAGATGTCATCAGCACCACAGAGCATCCTGAGAGCTCACTACAGCGAGGATGCCTTGCTTGATGGAGAAGATGCAACTGAGCAGGATATCCACTTGGCGTTGGACTCGGATAACTCGAGCAGCAGATCAGGTAGTGGTGGGAGCTGGCAGGATGTCCCACCCGTTTTCCAGTTTAAACCCCATTTGCCCATGCAGGCCGTGGTGATGGAAAAATCCAACGACCACTTTGTTGTAAGAATCAGACACACATCCACTGAGCCTGATCAGAGTGACTCTGTTAAACCCCCAGAAATACAACCAGCCACAGATGCAGTAACTTGTTCTACTGGAACCCCCACAGCACCATCAAATGATGAAACTAATGTACTGCTTGCAGAGGAAGACCCATCAAAACTGTTAGTTCTGGACAACAGCGTCCCTGATCCAGATCCAGATGTTAACTGTATGGCTTTGGCAAAGGAGCCATCTATAGCGCCATCAGACTCTGAGGGGGAACGATCCACTGGGCCAGCTGAGAAATCTAGTCTTCCCACCGAGGAGCCCAGTGTGCCTGATCAGCCCAGCAGTGCACATTCTGCTGGCAAGAAGCGAAAGAGACACCACTCGGAGCGGGTGGCAAAGAAAGCGAAAACGGAGGTGACCCAAAAGGGccagaagaaacagaaaaagaaaaagaagtcCAAAGACAATCCAGAGAAAGGCACCAAGTCTCCCAAAATGAAGACTAAAACCGCACCCCCTCCCGCATCATCACCTAACAGTCTATCTGCCAAGAATGTAATCAAGAAGAAAGGAGAAGTTGTCGTGGCATGGACCAGGGATGACGACCGAACTATCCTAGTGGAACTCAAGAAGAAAGGGGCTTCTGAAAAAACATTCTCTTCTCTGTCTAGGAAATTAAATAAGCTGCCAGCTCAGATTGCAGAGAGGTTTTGCCAGCTGATGAAGCTCTTCAAGAAGAAAGAACGGATGGACAGCTGATCTCCATGGACTGGGATGCCAGTTTAAGCATCgtgggggagaaaaagaaagaaaaagcaagtcTGGAAACATTAACAAGTGTCCACAGTATGCAGTGTGATGTATCCACTGTCATTGTTGTGTGTAGGTCAGACTGCAGACACTGGACTCCCTGGGCATGTACATCCCCCTCTGAGTGAGGGTCTCACTCTGGGTCCAGAACAGCCGTGCCTATAGCAAAGGCAAAGCCATCTACGAGTGAGAAGCAAGCACTTGTCCTTATTTTGGAACTTTTATGTCCTGTATTGATGATGctgggaagggaaaaaaacgTATTTTCACCCTACTCTCAAAGTAATGCCTTAAGTACCACAACCACACTGCATAAAATGAGGGTTAATCGCCAGGATGATGAAACATTATCCTTTTTTGCTGTTTTCATCACGGAGACCGAAAGCAAAATAATCCTGTACTTGGACATCACTTTCTCAAGCAAGTTGAATCTGAAATCTGTTACATTACAGTGGTCGAAACGAGGAGCTAATTTGGAAGGCAATTCAAAATGTAGGGTATTTCATACCTTACACAAACTTCCTGGTATACATtgctaaatgttaaaaatgaccTCTATCAGGTACTGTTTATCAAAATAAACCTACATgttagtttcattttaattttaacatttgtgGTTGGTGAAGTGCACTAAGAACctaataaatcaattttttcCTCTTGAGGTTACTGTATATTGAGAGCAAATGTGCtgaa

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003628 True 6441 mRNA 0.45 8 12132846 12144928

Neighbor

gene id symbol gene type direction distance location
AMCG00003624 NA coding upstream 107912 12006436 ~ 12024934 (+)
AMCG00003622 NA coding upstream 276113 11851827 ~ 11856733 (+)
AMCG00003620 NA coding upstream 292350 11839737 ~ 11840496 (+)
AMCG00003621 NA coding upstream 304416 11824785 ~ 11828430 (+)
AMCG00003615 NA coding upstream 390208 11732555 ~ 11742638 (+)
AMCG00003630 NA coding downstream 2712 12147640 ~ 12148899 (+)
AMCG00003634 NA coding downstream 705205 12850133 ~ 12854702 (+)
AMCG00003639 exoc8 coding downstream 721489 12866417 ~ 12868471 (+)
AMCG00003633 trim67,LOC106571401 coding downstream 727585 12872513 ~ 12880357 (+)
AMCG00003642 NA coding downstream 746240 12891168 ~ 12901958 (+)
G2086 NA non-coding upstream 43860 12087537 ~ 12088986 (+)
G2042 NA non-coding upstream 104653 12026126 ~ 12028193 (+)
G2027 NA non-coding upstream 226658 11905983 ~ 11906188 (+)
G2018 NA non-coding upstream 301426 11813122 ~ 11831420 (+)
G1987 NA non-coding upstream 562436 11570052 ~ 11570410 (+)
G2125 NA non-coding downstream 75394 12220322 ~ 12259643 (+)
G2139 NA non-coding downstream 242675 12387603 ~ 12388058 (+)
G2250 NA non-coding downstream 929760 13074688 ~ 13080021 (+)
G2264 NA non-coding downstream 953633 13098561 ~ 13101316 (+)
G2267 NA non-coding downstream 957529 13102457 ~ 13102666 (+)
AMCG00003614 NA other upstream 402855 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 555517 11573731 ~ 11577329 (+)
AMCG00003606 NA other upstream 641249 11490185 ~ 11491597 (+)
AMCG00003604 NA other upstream 649915 11461663 ~ 11482931 (+)
AMCG00003570 NA other upstream 2351090 9777508 ~ 9781756 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other downstream 757638 12902566 ~ 12917002 (+)
AMCG00003648 LOC106571761 other downstream 880641 13025569 ~ 13042597 (+)
AMCG00003655 xdh other downstream 1010132 13155060 ~ 13206839 (+)
G2440 NA other downstream 2273588 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 2706824 14851752 ~ 14866758 (+)

Expression


Co-expression Network