AMCG00003632


Basic Information

Item Value
gene id AMCG00003632
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12256469 ~ 12283492 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003632
GGGCATCTTTGTAAGGAACACCCACTtcctggagctgctgcagcaaCTGcggaaaaatagaaaaaaaggaaaaaaaacgtAGTCAATGAAAGCTGCACTTTAAAGTTATACCGCTTAATCAAATGGGTCCAAAGTACTTCTATTGTGTGTTGGATCCCTTCATTTGCACCGAGTATAGGCGCATGTAATTACAGTCCATTTCGTGCACCCGGGCTCAAGACCAGGCGCTGCGCCGATGTGGGGAGCTCGGTCTGCGGAGAGGGGAAGTCACTCCAGCCCGAGGCTGTAATCAGGCCAGCCGCGGCCTAGGCGCTCAGTGGGAACTCCTCGCACAGGGACATTAGTTTCGAGTCTGTGTCTGCGTACATTGTGTTTACGTGAGGATTTGTTTGTGCggtttttaaattacacattttttccTGTAGCACCAAACGATATTACTAACTAGTGGGGGCtttttttccagcttttgaAGTTGTTGACATAAGTTTTCAAAGTGAGACGTGCTCCAGCCCGATCAGTTGTTTACGGGATTAGTGTCCTGCTCTGATTCAATACGGTAATATTACTGTGTTGCCATGAATGTGATCTGAATGTATCCACATTATCCggatgtttattatttttgatcgACCATCATGTCTGCACCATCCGCTGAAATGATCGACACGCCACCTGGGTACCCCTTCGAGGAGATTGAATACACGGATATTGAGGTGGAAGAGGTTGTCGGGAGAGGAGCTTTTGGTGTGGTCTGCAAGGCTAAATGGCGAGGCAAAGATGTGGCAATCAAAACTATAGAAAGTGAAtctgaaagaaaagcatttataGTGGAGCTGCGACAACTCTCCCGTGTTAATCACCCGAACATTGTGAAGCTCTATGGATCATGTAGTAATCCAGTTTGCCTAGTTATGGAGTATGCCGAAGGAGGATCCTTATACAATGTGCTGCATGGTGCCGAGCCCCTCCCCTATTACACAGCCTCCCATGCCATGAGCTGGTGTTTACAATGTTCCCAAGGAGTGTCCTATCTCCATGGCATGAAACCAAAGGCTCTTATTCACAGGGACCTCAAACCACCAAAGTATGCATTCTCCGACACTCGCAGCAATTACAGTGAAAAGTGTGATGTTTTTAGCTGGGGGATTATTCTCTGGGAGGTGATAACCCGCAGAAAACCTTTCGATGAAATCGGAGGACCTGCCTTTCGAATCATGTGGGCTGTGCATAATGGTACTCGGCCGCCCTTGATTAAAAACCTCCCCAAGCCCATAGAGAGTTTAATGACACGTTGCTGGTCCAAGGACCCTTCGCAGCGGCCTTCCATGGAGGAAATTGTTAAGATTATGACTCATCTCATGCGGTACTTCCCGGGATCTGATGAACCACTTCAGTATCCCTGCCAGTATTCTGATGAAGGACAAAGCAATTCAGCCACTAGTACAGGATCCTACATTGACTACAACTCCACCAACACAAGTAACAAAAGCGATATCAATATGGAACCTGGAGACTCCCAGGTCAACGACACTATAAAGAGGAATGAATCCAAATTTATACCACAATTCAAGCCCAAGGTGGAAGGGATGCGCTCATCTCTGCCCCTGTCCAGAGGGGGCAGCGTGGAGAGCCTGTCAGAGTCGCGAGGACGGCCACAGTCTGTGGTGTCTGTGGACAACAAGAGGATGAGTGCAGACCTGTCTGAGCTGGAGCCTAGGGTGACCTTCGTAAATCCAGGAGCAAACAGTGAGCCTCAAAGACGCAGATCTGTGCAGGACCTTCAAGGGATAGGGACAGAATCCAGTCAGGGGAGTCGGAACAGCAGCCGGTCGTCCAGCCCCAGTTTGAGGATGATCACCTCCACGGAAAAACCAGCCAGGAATTACGGTTTCTCACCGGATGATTCTACAGACACCAACGGCTCAGATAATTCCATTCCCATGGCCTATCTTACACTGGATCACCAGTTACAGccACTTGCTCCTTGTCCAAACTCCAAAGAATCCATGGCAGTGTTCGAACAACATTGCAAAATGGCCCAGGAATACCTGAAAGTCCAAACCGAAATTGCTTTGCTGATACAGCGAAAGAACGAGCTGATCGCAGAGCTGGACCAGGACGAGAAGGACCAGCAGAACACGTCCCGCTTGGTCCAGGAGCACAAGAAACTCCTGGAGGAGAACAAGAGTCTCTCCACGTATTTCCAGCAGTGCAAAAAACAACTTGAAATCATCCGAGCCCAGCAACAAAAGCGACAGGGCACTTCCTGAGGCCATTGCAGACGCCTACgcctgcccctgcccccccgCCATGCTGCAGAAGAACGGACTGCTCACGTGTTGTAATCTTTCCTGCCATTACAGGTGGCTTGTTTTAAGGATTAGCATCTTGGTGTGGAAGCCTATACATCCTCTGCAActgttttcttcccttttttttaaatattattttatttgtcttctcCCTCTTAGTGAAACTATTAATCCTGGGTCAGTATGACAGAGTTGGTTGTGGCTTTTCTTGCACTGTAAAGAGACCTATGATCTACTGTGTTTAAGCATGCTGCAATTCATCCATTGGTCCGGGGAGGGGTCTGGGCTGAGTGTCAGTGCTGGACTTGGCATTAGGATGCGTTATGGTTTCGTTTAACGGCATCGATTCTCAAAAATAGGCAAGAGAAACTAAGATTAATGATACCACCTTTCCCCTGTGCGTAGTGCGAGGGATATCGGGATTGTGCTACGTGTTACTTGGTCGGTGAAGATGGCCCATATAAAATAGTTCAGGTGATGTcggttttcatttaatatagtATCATCTGGGAGAGCTCACAAACAGGGCTGTAACCCacttttctttctaaataaGTCATTGTCATCATGTTTACCCCTTTCAGAACGATGTATTGCACAGGAGGAAATTTCCACAAAAGACTGTTCGTAACGCTGGCGTCCTCTCGGCATCAACACAGGAGGGAGATGGGAAGGTTTTGAAAGCATGTGCAATAAGTGCGAGTCGGTGTCGGTTGCCAGAGTCTCTTGTGGAATATCGGCCACTCGGACAAGATGACCGTTGTGTTCTGAGATTAATATGCAATTAAGATGCACAAGAATGACTTCTAATTCACCGTTGTCACCGTTTAACATTGAGTGGATGTTGAGACAAGAACTGTAAACTTGCCGTCATCCTGTTATGGCCATTTCTCAAACAGAGGGAGATGTATACTCTCTCCACGGCAAAAGCAAATGTGCAAACGGGTAAAATGACTTTTGGGTCATGACCGATCTCTACCTATGCTTTTTGGAATCTGAGACCATCGAAGGTTATGGAACATGTAGGTCACAGTTGGAAACCCCCATCATGGAGCTGGGCCCGAGCATCGCTTCTGTACATAGGTCACAGTATTACACTGCGCCATTTAGGAACTGCTCACTTGCAAAAAGTATTTGTAGATATTGGTTTTAATGTGGGGGGTGCGGGGAAGAGGGAAGGGGGTGTTTTAGGCAGGAAATATGCCTTTTCTGTTCATGCAGTGTCATAAAGTAGTAAGACCTGAGTGACCAGGCGACCAGTATGCAACGCATTCGAGgtgcaatgtttgttttatattccgTTTTCATAGGGCACCACTGGTCCGTCATCAGGAGCCATACATGTTCATTATTGACAGCAACCGCTACGAAATTACACTTGTGATTCTGAATGAGCGTGGTTATCATGCCTTCtgtgtcgttttgtttttttaatcagcgTTGGTTTTGTACTATAATCTGGACACAGTTCTGGGCTGGCCATTTTGTCTGGCTTGCTCATTTCCAGCCCCCACATCTTGGCTAGGCTTCCTCCTGTTCCATTTATTTcttttgattagattttttcaCAAGTTGCCTTAAATagcttgtattttaaaacctgGATTTCTCATTATTTGCTCATAAACCTGTTAATTTCACAGCATGCccagttacattaaaaaataaaaaaggaaaaaaaacttggcAGTTTCGGTTTCCACTAAATCTCAAATCTCTTATGCAAATGAAGGAATTGTTGTGCTCTGATTTGTTGGCTAAAATTCATTTTCCAATCTTGTCAAATGGAAAtgataatttgttttgcaaatgacCCCACAAGTATTGTGTTGAATTTATCTATACACATTACACTCAAATATGTTTATTGGGACTGGGGATGAGAGAAATATTGTTCTCTAATGATCTGGATGTCACAcatgagattttattttctcattaattttcttaattgacATCCCATGACATTTACAGTCTTAGTCAATAGCTGTGCTATAGTTTATTACCACCTCTAGGATTATAAGCACCCTCATAGCAGGTCAGTTAactttaatttatgttaatcttaaattaaatgtatagattaaaaaaaaagttcaaaataaagTCAACCACATCGAACGCATTTGTGATGAAATCTCAGAAGTGTGATGGCAGCCCCGATATAACCTTGTACCAGAAAAGCTGTTAAACTGGGGCTGGTGTAGTCTTGcatattaaatatgaacaaatagTCAAATAATCCATAGTTTTAAAGGACAGTCTTTAAAGCCTGAAGCTCATCTGCCTTTCTTTCACAGTGCTGCTGAGCAAAACAGTTATGCATATACAACCTTTTTTGCCAGTGCCAGAATTACTAGACACTCATTTATGAcagttatatattatttctcaGCATTAGGTTACAAAGATGGGATTTTTGTCTTTTCTGAGAAATATTTAATGTGGAAGTGCCCTGGAAACCTAATGTCCCCACATGTAcagcattcaaaataaaaggcATAACTACCATCACTCTGAGAGAACCAATTCCTCAACGGTGCGTCTACTTCTGTAGTGAAGATGTTATCATCAGAGTGAACAATATTCTCTTCCTCTGCGACTCTAGTGTCAAGATCACTAGACACCAACGTAGGGGATTTGAGCACATTATTCTAATTTGTGCAGTGAAAATATTTTGGCAAACACTAAGGTAGTACTATTGTGCACAATTCAGGTGTTTGGAACAACAGGACGACATTTGTCcgcaaaataattttatttatgatatAAGTGATCTGTAATGTctattcaaaaaataattgaaaaaggaGAAAGCCTACTCTGGTTCAGGTAGTGATATGTCAAAATAAGTATGTCAAATACTACATGATTGAAGTATTCATTTATGATATGCGGTGTGGTTTGTCccacaaaatgcttttttttttttttttttctccttttttttttttttt

Function

GO:

id name namespace
GO:0048514 blood vessel morphogenesis biological_process
GO:0000186 activation of MAPKK activity biological_process
GO:0005524 ATP binding molecular_function
GO:0004709 MAP kinase kinase kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04427 MAP3K7, TAK1; mitogen-activated protein kinase kinase kinase 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003632 True 5272 mRNA 0.43 15 12256469 12283492

Neighbor

gene id symbol gene type direction distance location
AMCG00003631 NA coding downstream 79837 12156367 ~ 12176632 (-)
AMCG00003629 LOC104963585,LOC104944503 coding downstream 125858 12079468 ~ 12130611 (-)
AMCG00003626 rragd,LOC107564985,LOC107693082,LOC107583676,LOC108435430,LOC107755772 coding downstream 279508 11958572 ~ 11976961 (-)
AMCG00003627 ube2j1 coding downstream 298815 11940494 ~ 11957654 (-)
AMCG00003619 LOC108427508,LOC101167911,LOC103355980,LOC108270165 coding downstream 378300 11866722 ~ 11878169 (-)
AMCG00003638 epha7 coding upstream 299645 12583137 ~ 12595386 (-)
AMCG00003635 epha7,LOC107567608 coding upstream 335294 12618786 ~ 12624689 (-)
AMCG00003636 ttc13,LOC106571397 coding upstream 552025 12835517 ~ 12855317 (-)
AMCG00003640 NA coding upstream 574784 12858276 ~ 12860667 (-)
AMCG00003637 NA coding upstream 579315 12862807 ~ 12865753 (-)
G2079 NA non-coding downstream 188211 12068049 ~ 12068258 (-)
G2071 NA non-coding downstream 204978 12051245 ~ 12051491 (-)
G2066 NA non-coding downstream 229311 12026919 ~ 12027158 (-)
G2052 LOC100846954 non-coding downstream 350798 11858921 ~ 11905671 (-)
G2044 NA non-coding downstream 393368 11732804 ~ 11863101 (-)
G2140 NA non-coding upstream 104116 12387608 ~ 12387931 (-)
G2142 NA non-coding upstream 134436 12417928 ~ 12418336 (-)
G2168 NA non-coding upstream 586009 12869501 ~ 12869951 (-)
G2196 NA non-coding upstream 614939 12898431 ~ 12901945 (-)
G2234 NA non-coding upstream 748436 13031928 ~ 13032764 (-)
AMCG00003625 NA other downstream 178317 12075319 ~ 12078152 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other downstream 316686 11921991 ~ 11939783 (-)
AMCG00003618 NA other downstream 467194 11743989 ~ 11789275 (-)
AMCG00003595 myo6,LOC106571274 other downstream 1139564 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 1300116 10951084 ~ 10956353 (-)
G2236 NA other upstream 751461 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 788304 13071796 ~ 13116660 (-)
AMCG00003667 NA other upstream 1381251 13664743 ~ 13732039 (-)
G2373 esrrg other upstream 1725966 14009458 ~ 14013021 (-)
G2500 NA other upstream 2527294 14810786 ~ 14811331 (-)

Expression


Co-expression Network