AMCG00003633 (trim67,LOC106571401)


Basic Information

Item Value
gene id AMCG00003633
gene name trim67,LOC106571401
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12872513 ~ 12880357 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003633
ATGGACGCGATGGACGAAGAATTAAAATGCCCCGTCTGCGGCTCCTTGTTCAGGGACCCCATCATCCTGCCGTGCTCTCACAACGTGTGCATGGCTTGCGCCCGCAACATCATCGTGCAGACCCCAGAAGGCGACAACCTCCCGCACAGCCGAGCCTCCGCCAGCTCCGACTATGACTATCTCGACATGGACAAAATGAGCCTGTACAGCGAGACGGACAGCGGCTACGGCTCCTACACGCCGTGCCTCAAATCCCCCAACGGGGTGAGGGTCTTCCCCCCGGCCCCCATGCACCGGCACTGCTCCATCACCTGCCCGCTGTGCCACCGGAGCGTCTCCGTGGATGAGCGGGGTCTGCGCGGCTTCCCGAGGAACCGGCTGCTGGAGGCCATCGTGTCCCGGTACCAGCAGAGCCGCGCCGTGTCCGTCAAGTGCCAGCTGTGCGACCGAAACCCGGTCGAGGCCACCGTGATGTGCGAGCAGTGCGACGTGTTTTACTGCACGCCGTGCCAGCAGCGCTGCCACCCTTCCCGCGGGCCCCTCGCCAAGCACCGCTTGATGCCCCCGAGCCAGGCGCCCAGCAGCAGCCAGCCCCCGGccaccgccgccgccgccgccagGAAACTGACCAGCTGCGTCGAGCACGACCTGGAGAACCACAGCATGTACTGCTTGAGCTGCCGGACCCCCGTGTGCTACCAGTGCCTGGAGGAGGGCAAGCATGGGCAGCACGACGTCAAAGCCCTGGGCATCATGTGGAAACAGCACAAGAGTCAGCTTTCCCAAGCCTTGAACGGTGTGTCGGACAAAGCCAAGGACGCCAAGGAGTTTCTGGTGCAGTTAAAGAACCTGCTGCAGCAGATACAGGAAAATGGGGTCGAGTTCGAAGCATGTCTTGTGGCTCAGTGTGACGCCCTTATAGACGCACTGACCCGACAGAAAGCCAAGCTCCTCACTAAGGTCACTAAGGAGAGAGAATATAAGCTAAAGACCACTGGGCTGATGGAATACTGTCTGGAAGTGATGAAAGAGAATGATCCCAGTGGCTTCCTGCAGATCTCTGACGCCTTGATCAAACGGGTGCAGTCCTCGCAGGATCAGTGGGTGAAAGGGGCACTGGAGCCCAAAGTGTGCTCAGAGTTTGACCTGTCTCTCAACAGCGACCCCTTGCTGCAGTCCATCCACCAGCTGGACTTCCTGCAGATCAAATCAGACCCATACACAGTGCCCCCGGCCCCGGAGCTGCAGCTGGAGAAGTGCTGCACCCGCAACAACAGCGCTACCCTGGCCTGGAGGATCCCCACCTTCAACCAGTCCCCCTTGGAGGGCTATGTGCTGGAGCTGGACGACGGCAGTGGGGGGCAGTACCGGGAGGTGTATGTGGGGAAGGAGACAGTCTGCACAGTCGATGGCCTTCACTTCAACAGCTCCTACAATGCGCGGGTGAAGGCCTACAACTCCACTGGAGTGGGGCCCTACAGTAAGACAGTCATCCTGAAGACGTCTGATGTGGCGTGGTTCACCTTTGACCCCAGCTCAGCTCACCGGGACATCGTGCTGTCCAACGACAACCAGACCGTGAGCTGCAGTAGCTATGATGACAGGGTGGTCCTGGGCACGGCCGCGTTCTCCAAAGGGGTGCACTACTGGGAGCTGGCCGTGGACCGCTACGACAACCACCCGGACCCGGCGTTTGGCGTGGCCAGGATCAACACCATCAAAGACATGATGCTGGGGAAGGACGACAAGGCCTGGGCCATGTACGTGGACAACAACCGCAGCTGGTTCATGCACGGCAACTCGCATACTAACAGAGCCGAAGGAGGAATCTGCAAAGGCTCGTCAGTGGGAATCCTGCTGGACCTCAACAAACACACCCTAACGTTCTTCATAAATAAGGAGCAGCACGGGCCGGTGGCGTTCGAAAACCTGGACGGCGTTTTCATGCCAGCCATTAGtcttaacagaaatgttcaGGTAACCCTTCTGACTGGCTTGGAGGTACCAAAGAACATGAAGCAACTGTAG

Function

symbol description
trim67 Predicted to enable zinc ion binding activity. Predicted to be involved in regulation of cellular protein localization. Predicted to act upstream of or within negative regulation of Ras protein signal transduction; positive regulation of neuron projection development; and positive regulation of ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and cytoskeleton.

NR:

description
PREDICTED: tripartite motif-containing protein 67

GO: NA

KEGG:

id description
K10649 TRIM9_67; tripartite motif-containing protein 9/67

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003633 True 2028 mRNA 0.60 10 12872513 12880357

Neighbor

gene id symbol gene type direction distance location
AMCG00003639 exoc8 coding upstream 4042 12866417 ~ 12868471 (+)
AMCG00003634 NA coding upstream 17811 12850133 ~ 12854702 (+)
AMCG00003630 NA coding upstream 723614 12147640 ~ 12148899 (+)
AMCG00003628 NA coding upstream 727585 12132846 ~ 12144928 (+)
AMCG00003624 NA coding upstream 847579 12006436 ~ 12024934 (+)
AMCG00003642 NA coding downstream 10811 12891168 ~ 12901958 (+)
AMCG00003641 NA coding downstream 38480 12918837 ~ 12926056 (+)
AMCG00003649 ccdc28a coding downstream 140020 13020377 ~ 13024239 (+)
AMCG00003647 NA coding downstream 173072 13053429 ~ 13055181 (+)
AMCG00003653 NA coding downstream 210736 13091093 ~ 13092094 (+)
G2139 NA non-coding upstream 484455 12387603 ~ 12388058 (+)
G2125 NA non-coding upstream 612870 12220322 ~ 12259643 (+)
G2086 NA non-coding upstream 783527 12087537 ~ 12088986 (+)
G2042 NA non-coding upstream 844320 12026126 ~ 12028193 (+)
G2027 NA non-coding upstream 966325 11905983 ~ 11906188 (+)
G2250 NA non-coding downstream 194331 13074688 ~ 13080021 (+)
G2264 NA non-coding downstream 218204 13098561 ~ 13101316 (+)
G2267 NA non-coding downstream 222100 13102457 ~ 13102666 (+)
G2281 NA non-coding downstream 346878 13227235 ~ 13228357 (+)
G2294 NA non-coding downstream 366952 13247309 ~ 13254443 (+)
AMCG00003614 NA other upstream 1142522 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 1295184 11573731 ~ 11577329 (+)
AMCG00003606 NA other upstream 1380916 11490185 ~ 11491597 (+)
AMCG00003604 NA other upstream 1389582 11461663 ~ 11482931 (+)
AMCG00003570 NA other upstream 3090757 9777508 ~ 9781756 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other downstream 22209 12902566 ~ 12917002 (+)
AMCG00003648 LOC106571761 other downstream 145212 13025569 ~ 13042597 (+)
AMCG00003655 xdh other downstream 274703 13155060 ~ 13206839 (+)
G2440 NA other downstream 1538159 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 1971395 14851752 ~ 14866758 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017104 TRIM67 coding NC_007131.7 CM002904.2 4060839 ~ 4132099 (+)
grasscarp (Ctenopharyngodon idella) CI01000051_06837978_06881158 TRIM67 coding CI01000051 null 6837414 ~ 6881706 (-)