AMCG00003635 (epha7,LOC107567608)


Basic Information

Item Value
gene id AMCG00003635
gene name epha7,LOC107567608
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12618786 ~ 12624689 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003635
TGTGGCCGTGGATTCTATAAATCATCCTCCCAGGACCTCCAGTGTTCCCGCTGCCCTGCACACAGCTACACTGACAAAGAAGGCTCGTCCCGATGCGACTGCGAGGATGGATATTACAGAGCCGTTTCAGACCCGCCATCTGTGGCATGCACAAGACCCCCGTCTGCACCACAGAATCTGATTTACAACATCAACCAGACAACCGTGAGCCTAGAGTGGAGCCCTCCTGCCGACAACGGAGGCCGCAATGATGTCACCTACAGGATTGTGTGTAGGAGATGTAGCTGGGAACAGGAGGAGTGCCTGCCCTGTGGCACAAACGTTGGATTTGTACCCCAGCAGTCTGGATTAGTCGATACCTATGTCACCATCCTGGACTTGCTGGCGCATGCCAACTACACGTTTGAGGTCGAGGCTGTGAACGGTGTCTCAGACCTCAGTCGCACTCAGAGGCTCTTTGCTGCCGTCAGTATTGCGACTGGCCAAGCA

Function

symbol description
epha7 Predicted to enable transmembrane-ephrin receptor activity. Predicted to be involved in axon guidance; positive regulation of kinase activity; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in several structures, including forebrain midbrain boundary neural keel; forebrain midbrain boundary neural rod; hindbrain neural keel; mesoderm; and nervous system. Orthologous to human EPHA7 (EPH receptor A7).

NR:

description
PREDICTED: ephrin type-A receptor 7-like

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005003 ephrin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003635 True 489 mRNA 0.55 2 12618786 12624689

Neighbor

gene id symbol gene type direction distance location
AMCG00003638 epha7 coding downstream 23400 12583137 ~ 12595386 (-)
AMCG00003632 NA coding downstream 335294 12256469 ~ 12283492 (-)
AMCG00003631 NA coding downstream 442154 12156367 ~ 12176632 (-)
AMCG00003629 LOC104963585,LOC104944503 coding downstream 488175 12079468 ~ 12130611 (-)
AMCG00003626 rragd,LOC107564985,LOC107693082,LOC107583676,LOC108435430,LOC107755772 coding downstream 641825 11958572 ~ 11976961 (-)
AMCG00003636 ttc13,LOC106571397 coding upstream 210828 12835517 ~ 12855317 (-)
AMCG00003640 NA coding upstream 233587 12858276 ~ 12860667 (-)
AMCG00003637 NA coding upstream 238118 12862807 ~ 12865753 (-)
AMCG00003644 NA coding upstream 258778 12883467 ~ 12891135 (-)
AMCG00003646 NA coding upstream 280683 12905372 ~ 12906889 (-)
G2142 NA non-coding downstream 200450 12417928 ~ 12418336 (-)
G2140 NA non-coding downstream 230855 12387608 ~ 12387931 (-)
G2079 NA non-coding downstream 550528 12068049 ~ 12068258 (-)
G2071 NA non-coding downstream 567295 12051245 ~ 12051491 (-)
G2066 NA non-coding downstream 591628 12026919 ~ 12027158 (-)
G2168 NA non-coding upstream 244812 12869501 ~ 12869951 (-)
G2196 NA non-coding upstream 273742 12898431 ~ 12901945 (-)
G2234 NA non-coding upstream 407239 13031928 ~ 13032764 (-)
G2235 NA non-coding upstream 408550 13033239 ~ 13034060 (-)
G2257 NA non-coding upstream 452959 13077648 ~ 13080021 (-)
AMCG00003625 NA other downstream 540634 12075319 ~ 12078152 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other downstream 679003 11921991 ~ 11939783 (-)
AMCG00003618 NA other downstream 829511 11743989 ~ 11789275 (-)
AMCG00003595 myo6,LOC106571274 other downstream 1501881 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 1662433 10951084 ~ 10956353 (-)
G2236 NA other upstream 410264 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 447107 13071796 ~ 13116660 (-)
AMCG00003667 NA other upstream 1040054 13664743 ~ 13732039 (-)
G2373 esrrg other upstream 1384769 14009458 ~ 14013021 (-)
G2500 NA other upstream 2186097 14810786 ~ 14811331 (-)

Expression


Co-expression Network