AMCG00003639 (exoc8)


Basic Information

Item Value
gene id AMCG00003639
gene name exoc8
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12866417 ~ 12868471 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003639
ATGGCAGACACTGGAAACAGGCTGCGAAAGCAACTGGAGTCTGCGAATTTCGACCCGCAGAATTACGTGAAACAGCTCTCCCAGCAGTCGGACGGCGACCGAGACCTGCAAGAGCACCGACAAAAGATACAGACTTTAGCCGACGAAACGGCACAAAATCTGAAGAAGAATGTCTACAAGAATTACAGACAGTTCATCGAGACTGCCAAAGAAATCTCCTACTTGGAGAGCGAGATGTACCAGCTGAGCCACATCCTGACGGAGCAGAAGAGTATCATGGAGAGCATCACCCAGGCTCTGCTGTCTGCAGACAAAGATGAGGCTGCAAAGGAAATGCTGGCTGCCTTCCCGAAAGAAACCGAAGAGGTAAAGCAGAGGACGCTGACAACGTTGCTGGAGAAAGTAGAGGGCTGCAAAAATATTATGGAGACGCCAGGCAGGTATTTGGTGTACAACGGTGACCTGTTTGAATATGACGTTGATAATATGTCCCAGATACAGAAAGTGCACGCCTTTCTGATGAATGACTGCCTCCTCATTGCCACCTGGCTCCCCAACCGGCGCGGCGCAGTGAGGTACAAGTACAACGCCCTGTACGACTTGGACAGCTTTGCCATCGTCAACGTGAAAGACAACCCCCCCATGAAGGACATGTTCAAAATCTTGATGTTTCCAGACAGCCGCATCTTCCAGGCGGAGAACAGCAAGATCAAGAAAGAGTGGCTGGAGGTTTTGGATGAGACTAAGAAAAACAAGGCGGTGAAGGAGAGACacaagaaggaggaggagataCCCAACTCTCCAGTGCGACAGGAAGTGTCCAAGAACCCCTTTGACGTGGAGGAGTCCAGTGCTTCAGAAGAGCTGGTTGACTTGAGCTTGGAGTGGATTCAAGAGCTGCCAGAGGATCTTGACGTATGTATTGCCCAGCGGGACTTTGAAGGGGCGGTGGACCTGCTGGATAAGCTTAATGAGTACCTGAAGGACCAGCCCATTAGCCAGCCTGTCAAGGAGCTGAGGGCCAAAGTGGAGGAGCGTGTGAGACAGCTGACGGAGGTGCTGGTGTTCGAgctctcccccgatcgctcctTGCGGGGCGGCCCCAAGGCCACGCGCCGGGCTGTATCCCAACTGATCCGGCTGGGCCAGTCCACCAAGGCCTGTGAGCTCTTTCTGAAGAACCGGGCAGTCGCCGTGCAGACCGCCATTCGTCAGCTACGCATCGAGGGTGCCACCTTGTTGTACATCCACAAGCTCTGCAACATCTTCTTCACCAGCCTTCTCGAGACGGCCAAGGAGTTCGAGATGGACTTTGCTGGCAACACCGGCTGTTACTCTGCCTTTGTGGTGTGGTCCCGCTCAGCCATGAAGATGTTTGTGGACGCTTTCAGCAAGCAGGTCTTCGACAGCAAGGAGAGCCTGTCCACAGCAGCAGAGTGTGTGAAGGTAGCCAAGGAGCACTGCAAGCAGCTCAGCGAAATTGGCCTAGACCTCACCTTCACCCTGCAGTCCCTCCTACTCAAGGACATCAAGGCTGCTCTGCACAGCTTTAAGGAGATCATCATTGAGGCCACCAAGCACCGCAACTCAGAGGAGATGTGGAGGAAGATGAACCTGATGACCCCGGAGGCACTGGGGAAGCTGAAGGAAGAGATGCGGAACTGTGGTGTGGTCAACTTTGATCAGTACACTGGCGATGACTGCTGGGTCAACCTGAGCTACACGGTGGTGGCCTTCACCAAGCAAATGATGGCCTTCCTGGAAGAAGGTCTCAAGCTGTACTTCCCTGAGCTGCACATGGTCTTGCTGGAGAGCCTGCGGGAAATCATCCTGGTGGCCGTCCAGCATGTAGACTACAGCCTGCGGTGTGAGCAGGAGGTGGAGAAGAAAACGTTCATTTGCCAAAATGCCTCCTTCCTCTACGAAACTGTCCTGCCAGTGGTGGAGAAGAGGTTTGAGGAAGGGGTGGGGAAGCCTGCCAAGCAGCTGCAGGACTTGAGAAATGGCTCCAGGCTGATACGCATCAACCCCGAGAGTACGACTTCCTTAGTGTAG

Function

symbol description
exoc8 Predicted to be involved in Golgi to plasma membrane transport and protein localization. Predicted to act upstream of or within exocytosis and protein transport. Predicted to be located in growth cone and perinuclear region of cytoplasm. Predicted to be part of exocyst. Orthologous to human EXOC8 (exocyst complex component 8).

NR:

description
exocyst complex component 8

GO: NA

KEGG:

id description
K19986 EXOC8, SEC84; exocyst complex component 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003639 True 2055 mRNA 0.54 1 12866417 12868471

Neighbor

gene id symbol gene type direction distance location
AMCG00003634 NA coding upstream 11715 12850133 ~ 12854702 (+)
AMCG00003630 NA coding upstream 717518 12147640 ~ 12148899 (+)
AMCG00003628 NA coding upstream 721489 12132846 ~ 12144928 (+)
AMCG00003624 NA coding upstream 841483 12006436 ~ 12024934 (+)
AMCG00003622 NA coding upstream 1009684 11851827 ~ 11856733 (+)
AMCG00003633 trim67,LOC106571401 coding downstream 4042 12872513 ~ 12880357 (+)
AMCG00003642 NA coding downstream 22697 12891168 ~ 12901958 (+)
AMCG00003641 NA coding downstream 50366 12918837 ~ 12926056 (+)
AMCG00003649 ccdc28a coding downstream 151906 13020377 ~ 13024239 (+)
AMCG00003647 NA coding downstream 184958 13053429 ~ 13055181 (+)
G2139 NA non-coding upstream 478359 12387603 ~ 12388058 (+)
G2125 NA non-coding upstream 606774 12220322 ~ 12259643 (+)
G2086 NA non-coding upstream 777431 12087537 ~ 12088986 (+)
G2042 NA non-coding upstream 838224 12026126 ~ 12028193 (+)
G2027 NA non-coding upstream 960229 11905983 ~ 11906188 (+)
G2250 NA non-coding downstream 206217 13074688 ~ 13080021 (+)
G2264 NA non-coding downstream 230090 13098561 ~ 13101316 (+)
G2267 NA non-coding downstream 233986 13102457 ~ 13102666 (+)
G2281 NA non-coding downstream 358764 13227235 ~ 13228357 (+)
G2294 NA non-coding downstream 378838 13247309 ~ 13254443 (+)
AMCG00003614 NA other upstream 1136426 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 1289088 11573731 ~ 11577329 (+)
AMCG00003606 NA other upstream 1374820 11490185 ~ 11491597 (+)
AMCG00003604 NA other upstream 1383486 11461663 ~ 11482931 (+)
AMCG00003570 NA other upstream 3084661 9777508 ~ 9781756 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other downstream 34095 12902566 ~ 12917002 (+)
AMCG00003648 LOC106571761 other downstream 157098 13025569 ~ 13042597 (+)
AMCG00003655 xdh other downstream 286589 13155060 ~ 13206839 (+)
G2440 NA other downstream 1550045 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 1983281 14851752 ~ 14866758 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G685762 exoc8 non-coding NC_048572.1 CM023226.2 21927047 ~ 21929631 (-)