AMCG00003641


Basic Information

Item Value
gene id AMCG00003641
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12918837 ~ 12926056 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003641
CGTGGACTGCAGTGTAGGCTTAagctaataaaacattttgggtTTCACGTGTGGAAAAGTACATATTGATAACCAAAGGTACATCCATACCTAGAATTGACACGttttcataatattttaaacaaaggtGACGAAGCAAACAATAgtttacataatataatattacatcATTCGGAGTTATACAAGCCATAACAAAGTGACTTACGCAACGAAGAAACTCGCATAAAACCCGCGGGGAGcccgtcgagctcccttcagtGCGCTCAGCAGCAGAGGGGCTCGCCGACAGGCTGCTTCTGCTCAGGTTTGCATTGTCCCAGGATGCTGAAGACGATCCAACAAGCCCTGTTCTCCAGTGGACTGCAGGAGCCCAAGTGGAAACCTATTGAAACTACGGCTCAGGATTATGAAATCCGAGAATATGAACAGACGAAGTGGGCGAGCACAGCTGTGAGTGGGATGCAGTACGATGCTGCCCTGAACACAGGATTCATGAGACTCTTCAGATACATTCAAGGGAACAATGAAAAAAAGGCGAAGATCGAGATGACCGCTCCGGTGACGTGTTTGGTGGACCCTGGCGCGGGGCCCTTCTGTGAGACCACCTTTACCACTTCTTTCTACGTGCCAGAAGAACATCAAGCTGACACACCCAAGCCATCGGACCCTGACGTGTTTATTGAAGACCGGAAGACGCTCACTGTGTTTGTCAGGACTTACGGGGGGTTTTCCAACGAGCAGAAGAGCCGagaggagctgctgcagctgATCGAGAGTCTGCGGAGAGACGGGCAGCAGTTCGTGGAGGAGCAGTATTACACTGCCGGCTATGACAGCcccttcaagatgctcaacagACACAATGAAGTGTGGCTCCTGAAGAAGAGCGCTGCTTGAAGGTCAGATGGAAGTGTGACAGAATTTTCACTGATGTTTTTGCtatgtaatagttttttttttattaatggaggttttttattgctgtatcgcagctgaaaaatgttttactacAGAAATGAATGCCTACAATAGTgtcttatttgtgtgtttttgaacctagcaaataatgaaaaaaggaaatgtatatcTGTGTCAGTAACCTAGATCCATTACAATCTATAGGCATtgtagtaaaataaatgcaaagtttttaagtataaatataattgtagaAAAGGTTTGCACTCCAAATTGGCACAGGTGCAGGCCAGCAGAAGTGCTGTGCAAAACTTTGGACTACTAATTCTTTTACATTACACTAAATAAAATTATCAATTTGCTTTACATA

Function

GO: NA

KEGG:

id description
ko00340 Histidine metabolism
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003641 True 1288 mRNA 0.44 5 12918837 12926056

Neighbor

gene id symbol gene type direction distance location
AMCG00003642 NA coding upstream 16879 12891168 ~ 12901958 (+)
AMCG00003633 trim67,LOC106571401 coding upstream 38480 12872513 ~ 12880357 (+)
AMCG00003639 exoc8 coding upstream 50366 12866417 ~ 12868471 (+)
AMCG00003634 NA coding upstream 64135 12850133 ~ 12854702 (+)
AMCG00003630 NA coding upstream 769938 12147640 ~ 12148899 (+)
AMCG00003649 ccdc28a coding downstream 94321 13020377 ~ 13024239 (+)
AMCG00003647 NA coding downstream 127373 13053429 ~ 13055181 (+)
AMCG00003653 NA coding downstream 165037 13091093 ~ 13092094 (+)
AMCG00003654 cnih4,LOC106584110 coding downstream 315995 13242051 ~ 13246855 (+)
AMCG00003656 NA coding downstream 394147 13320203 ~ 13325222 (+)
G2139 NA non-coding upstream 530779 12387603 ~ 12388058 (+)
G2125 NA non-coding upstream 659194 12220322 ~ 12259643 (+)
G2086 NA non-coding upstream 829851 12087537 ~ 12088986 (+)
G2042 NA non-coding upstream 890644 12026126 ~ 12028193 (+)
G2027 NA non-coding upstream 1012649 11905983 ~ 11906188 (+)
G2250 NA non-coding downstream 148632 13074688 ~ 13080021 (+)
G2264 NA non-coding downstream 172505 13098561 ~ 13101316 (+)
G2267 NA non-coding downstream 176401 13102457 ~ 13102666 (+)
G2281 NA non-coding downstream 301179 13227235 ~ 13228357 (+)
G2294 NA non-coding downstream 321253 13247309 ~ 13254443 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 1835 12902566 ~ 12917002 (+)
AMCG00003614 NA other upstream 1188846 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 1341508 11573731 ~ 11577329 (+)
AMCG00003606 NA other upstream 1427240 11490185 ~ 11491597 (+)
AMCG00003604 NA other upstream 1435906 11461663 ~ 11482931 (+)
AMCG00003648 LOC106571761 other downstream 99513 13025569 ~ 13042597 (+)
AMCG00003655 xdh other downstream 229004 13155060 ~ 13206839 (+)
G2440 NA other downstream 1492460 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 1925696 14851752 ~ 14866758 (+)
AMCG00003702 NA other downstream 2375024 15301080 ~ 15318228 (+)

Expression


Co-expression Network