AMCG00003642


Basic Information

Item Value
gene id AMCG00003642
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12891168 ~ 12901958 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003642
CTGCTCTGTCTGCTGGTTGGACTGGATGTGGAGGTGAAGGTGTTTCTGCTTTGagattatttaaagtttttttctctctctgctgtccaACCAAGGCTTGGCCTTATTCTGCTGCAGCCCGTCCGCTCATGCCTGTTATCTGCTGTAATAGTTCCTGGTTGTAAGGAATGGCATCCAAAAACTTGTATTCGCACCAGGATCCATCATTAAAGAAGAGAGATGACTTTGAGGATATCTTGGAAGAACGAAAGAACACGAGTGACGTGagatttgctttgaaatgttataCCCCCGTGCTGTACAAGGGAGTGGCCCCTTGCAAAGCCAGCCAGCTCAAAGCCAAAGTGCTCCAGTCCGCTCATCTTCAGTATGTTATCAAGCAGATGTCACAAGATACAGGGGAGTCCCCAGAGATCATCCAGGAGGAGGCGGCTGTGATCCTGGAGGAGATGGCCCACCGCCTCCAGCTCAGCGTCGTCCGTTTCTTCGCCTTCACGCTCAGCAAGGTCTTCAAGACGCTCTTCCAAAGAGTCCGAGTCAATGAGGAAGGGATCCAGAGACTTCAACAGGCTCTTCAAGAGCATCCTGTGGTGCTGCTCCCCAGTCATCGTAGTTATATTGACTTTCTTATGCTGTCCTACATCCTCTACACATACGATCTCTCCCTGCCTGTCATCGCTGCTGGAATGGATTTCCTGGGCATGAAGTTTATTGGCGAGATGCTACGAATGTCTGGAGCGTTCTTCATCCGCCGCTCATTTGGAGGCGACAAACTATACTGGGCTGTGTTCTCTGAATATGTCAAGACAACCCTAAAGACTGGCCACACTCCTGTGGAGTTCTTTTTGGAAGGGACTAGAAGCCGTACAGGCAAGACCCTGACTCCCAAATTAGGATTGTTGAATATCGTGATGGAGCCATTTTTTAAGGGGGAGGTGTTTGACATCAGTCTTGTTCCCATCAGCATCAGCTACGAGAGGGTGCTGGAAGAGGCACTGTACGCTCGTGAGCTTCTGGGAGTGCCCAAACCCAAAGAAACCACCTCGGGACTGATTAAAGCCAGGAAAATACTCAGTGAAGATTATGGAAGCATACACGTATACTTTGGGCAACCGGTGTCAATCCGAAGCTTGGCGCAGGGACAGATCAGCCGGTCCCAGTACAACTTGGTCCCCAGACATATCCCTAGGAAGCCTGGTGAGGACACCCAAGCCTTCGTCAACAACACGGCCTACAGAATAGAGCGCCTGCAGGAGGACAACATGGTTCTCCGGCCCTGGGTCCTGATCGCTACCATTCTCATGCAAAACCTGGAGGGGATAGACTTTGCGATCCTGACAGAGAAAACCGCCTGGCTGAGGGGGCTGGCACAGTCTTTTGGGGCCTTCCTGGACTGGCCTGaACACGAGAGCACCGGTAAGGTGGTGTCCTCCAGCGTGGCCCTGCATCACGACATTGTGGGCTGCGTCGGGGACCGTGTGGTGCTACTGGAGGGGTCGCAGGAGGCCGTCAGCCCAGAGGAGGCGGTCTTCACACGCGCCGTCACTGTGCTCATGTGCGCCTCCTACCGGAACCAAGTCATGCACATGTTCATACGGCCGGCGCTGGTGGCTGTGGCGCTGCACGCCGCGGGCAGCTCCAGAAAAGGTAACCGCTTCCACCGAGCACAGCATCCATTGGTGTGTCAGTACCTGAGCGAGGAGGTCGTCGAGGGTCTCAATGAGAAGCAGTACGTCCCAGCCGTCCGGAGCTTCGCTGTCAAACGCCTTCTAACAGGATGTCTCCAGTGCTATGAAGTGCTTTCCTCTGACATGCAGAAGAATGCGTTGAATGCTTTGCTCAGATTGAACGTGTTGCGAAAATCCAAGATAGCTGATCAAGTTACTATTAAAGTGAACAAGATGGCAGTGAACCAATTAGAAGACACACTAGGAGGCAAAATCCCAATCCGGAAAACAGTCCTTGCTCGACTGTAGTCTGAGTGCCATGTTTCAGAGAGGTACAGCTGCAGGGAGTGACTATTGCCTTCATTATTCATTACCACAATGCCAAATTAGCAAAGACATTTGCAGCAGGATCAAGAAAAaggccttttaaaaaaaaaaaaaaaaaaaagagactttGTAGACTGCCAGTGTGACAGCTTTATGGTTGAAACCACTAAAGTTGTTCACACAATTTCTTACAATTGAAAATCCTTTTAAGAGGTAAAGAGGTCTGCTATCAACTTACTCACCTGTATGTCTGTTTCTCtttagtttaatgtttttttttagtgttgCCAAACCTATTTTAATCATTGTTAACACACATTTAAGTTGTGACAAGTCTTGTGGACTCCcaagaacaaagaacaaaggTCAGGAACAACTGAGGACACAGTTCAGGAGGACCAGTTAGGCGCCTTATTCAAACATTTGGGGTGTAATTCTGGATTTTAGTTCTCGTTGTTGTCTGTCTTATCTATTGAAGAGTATTTCTGTGTTAAACCATTCAGCAAGGATCTCGGCTTGTTCCCTTGTAAATAAGGGAAGAGAAGAtgtcttttaattaatattctgtcaattatagtaataatgtattgactataatatatttatacatacttatacacacacatgtatgtatctatatatattgtgacacagaGCAGGGTGTGGGACCTGGGTTGTATGTCTCGGATGACATGACAAAGGCTGTGGAAACAACAGGAAATCCTAGTCCAAGTCTGGGCAATAGCTAACACTGTAAGCAAATCCCTAGCGATGCTCAGGCCACTTCTCGGTCCCCCAATCAAAACCGTCAGGTAATGCTTGCAGTTGTTAAGCAGCCTCATAGTCATTGTGGGAAAGCAGGAGTCAAAGGTCATAATCAGAGTCATAGTGTAGTCCAGGTCAAATCCCAAAGGAAGGTATAGCACAGACTGGTTGTTATGCAGTTAGCAGGTCAGAGTCGCACGGGTTCGCACGGGTTCCTCCTCTTGCAGCTCGGAAGTTCTCCTAAACGccctccttttttccccctcaggtACAGCTGGAGAGCTGCCGCTTTATAGGGCTCCATTCATTAGTGCCTGTAGGTGTGTCTCTTTTCCCACGCTGTCAGGTGTGTGAGTGACAGATCCCAGTACACCTAAACTGGTTACTGTACAAGAGCTCCAGGAGGGGGGAGACATTTCTTCTTTGTATATCTTATCGCCTGTACGAAACCATCACTGTGTCACAATATGTAATCCAATAACTTCCAAGTCTGAAAGTCAGACAAACACGCACAAACAggatatttttcaaaaaatgtatagtCTTTATTAATGCATAGAGGTTCAGAGAAAAATTTTAATGTAAGAGTGTGCAGCAATCCACTGGTTTTGTCAGTCTTTGGCCCTCACCAGGTTTGCTAAAAATTCTTCTGCTACTGTTTTTCTGTGAACCTCCACCTAAATATTAATACAGACTGTTGTTTctgtggatggatggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataattatgaatatgtatatgtgcatattCAGATTTAAATCATGTAGTCTTTAATGGTTGACTTGTagaactgtaaaaacaaaaaggttctATGATTTATAGTTTGAATTTCACGTCCCCAGTCCTGGTCCTGAAATGTTTCAGTATCTTCAAGGTGTCATTCAACCTGGGCTCCTAAGTACCTAATTTAActcaatattgtattaattgaacGAGGCTGCTTTTCCCAAAAATCTTTTGCACTGCAGCCCTCTGGGTCCAGGATTGGGGACCCTTTCGTCTATACCGTTTACATCTATAATCGATAATGAGAGGAGTCCGAGCCTTACTGTATGGATGGCACATCATTGCCAGCTTTGACAGGGATTCCCCCTGGGAGTAGCTGTGTTCAGAGTCAGACAGGGTTTCCTTGGTGTGCCACACACAGGGACTCTCTGGCTCATTGGAAACCTGCATTTCTGTCTGCAGTGTTAGTAGTGAGAGCTGTTAGTTCTGTCTGTGGTGTTAGAGCTCTGTTGGTTGTGATTTATGGAAATAAGCTAGTGGATTGACAGCACAGGATGTGTGTCAGCCTGCCTGTCAAGAGTTCTTGTAGATACTAGGTTGggtttttatatattacaacaTTACTTTGGTGATGTACATTATAATTAGGGAcgtttgttttatgtgtttttcagtCAAGGCAAAACGCAAGCCcctaatttgatttaatatcatTTTGAAAGCAATACAAGACGGTGGATTGAAAGGTTAGATTTATGGATTCTTAGaagattgtgtttttaaagtgctCATTCTGACCTACAAGTTTATGGCCAATGTGCCAAGCACCTAAAAGCATACATGCACTTTATATACTGAAAAGACTTCAGAAAGACAGAAATCTGGATCCTCCATCATGGAGTCCTCAACACAGGTCTTCAACGCCAATATGATATCAAGATCCGCACTCTCTCCACACATCTGTAACCAGACTAAATCTTGCCACCATTAGCAGTTCCTTCCACCATTAATGTTTGTCTGAAGTCGAACCGTTTGTTGCTAGACtcctgaaaaacacacattatgcTAGTTTACTGCTGCTACATAAACAGTGATCTCATTCTTTGCATTGTGCTGTGAGTCCTCCCCCTCACAGTGTAGGAAGGGTCTTTGTGTTTTCTACACTGCTGCACGGATTACAGCAGTCAGTCAATAGTAATTGCTATTCCAACTGCATGGGGAGAAATAAtctggttttaaattaatatataattttgtttacaaaacaaaatctgtatgAAAATCAGATCCCCAGGATTTCAATTTAGTATGCTAAATATATTAGCAGAAAAGTCCATCTGTAATATTCAAGTAGACCTTGTGCACACTGAaggatatataatatatacattatatatgtccTGTTGGTTTTAAAAAAGCTTCTAGGACCCAGACCCAGACCCATGGGTCTTCCCTTGCAAACGAaagaaggagattgagctgAATGAATTTGACTCacaggataaaaacaaacaagcttcAAGACGGTTTCGCCAGGCTGGTTGAAGGAACGGCTTGTTTATGTTTCAATGATCAATCTTTTATATGTGAAAGACAGGTCAAAAACCTCTGCTTTGCCGCCTTCCctgaataaaatactatttatttctcAACATCTTACTGaacataatgcattattttattttttgaagtttAAACACTTGAGGAAATTTCATAATGAAAGTTTCTGCAACactgtaataaatgtatagtttttgttgttttgttatataattGATTTGGTCAGTACCACTGTCCATTCTGCTCATGTTTTGCAGATAGCAAACTTTCTAGCCACACTTTGATTCTTGGATGTGGTCATTTTTCATGTAATGGAGTGTGTGattgtttcttcttttaataataaaaatactgatGAAAGGCTTTTACTAA

Function

GO: NA

KEGG:

id description
K00649 GNPAT; glyceronephosphate O-acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003642 True 5468 mRNA 0.44 14 12891168 12901958

Neighbor

gene id symbol gene type direction distance location
AMCG00003633 trim67,LOC106571401 coding upstream 10811 12872513 ~ 12880357 (+)
AMCG00003639 exoc8 coding upstream 22697 12866417 ~ 12868471 (+)
AMCG00003634 NA coding upstream 36466 12850133 ~ 12854702 (+)
AMCG00003630 NA coding upstream 742269 12147640 ~ 12148899 (+)
AMCG00003628 NA coding upstream 746240 12132846 ~ 12144928 (+)
AMCG00003641 NA coding downstream 16879 12918837 ~ 12926056 (+)
AMCG00003649 ccdc28a coding downstream 118419 13020377 ~ 13024239 (+)
AMCG00003647 NA coding downstream 151471 13053429 ~ 13055181 (+)
AMCG00003653 NA coding downstream 189135 13091093 ~ 13092094 (+)
AMCG00003654 cnih4,LOC106584110 coding downstream 340093 13242051 ~ 13246855 (+)
G2139 NA non-coding upstream 503110 12387603 ~ 12388058 (+)
G2125 NA non-coding upstream 631525 12220322 ~ 12259643 (+)
G2086 NA non-coding upstream 802182 12087537 ~ 12088986 (+)
G2042 NA non-coding upstream 862975 12026126 ~ 12028193 (+)
G2027 NA non-coding upstream 984980 11905983 ~ 11906188 (+)
G2250 NA non-coding downstream 172730 13074688 ~ 13080021 (+)
G2264 NA non-coding downstream 196603 13098561 ~ 13101316 (+)
G2267 NA non-coding downstream 200499 13102457 ~ 13102666 (+)
G2281 NA non-coding downstream 325277 13227235 ~ 13228357 (+)
G2294 NA non-coding downstream 345351 13247309 ~ 13254443 (+)
AMCG00003614 NA other upstream 1161177 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 1313839 11573731 ~ 11577329 (+)
AMCG00003606 NA other upstream 1399571 11490185 ~ 11491597 (+)
AMCG00003604 NA other upstream 1408237 11461663 ~ 11482931 (+)
AMCG00003570 NA other upstream 3109412 9777508 ~ 9781756 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other downstream 608 12902566 ~ 12917002 (+)
AMCG00003648 LOC106571761 other downstream 123611 13025569 ~ 13042597 (+)
AMCG00003655 xdh other downstream 253102 13155060 ~ 13206839 (+)
G2440 NA other downstream 1516558 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 1949794 14851752 ~ 14866758 (+)

Expression


Co-expression Network