AMCG00003644


Basic Information

Item Value
gene id AMCG00003644
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12883467 ~ 12891135 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003644
GGACGGTGGGCGAAAGGAGACAAACCAGTTCAAACGTCCGGTTTGCACCACGTGAAAAGAAGAGCGCCTTTAACATGGTGCcgttcatgcacacacacacccgaatagtgcttttcattctttactgaaaatgaaaaccaaatcaaaagtgAGCCGAAACATAAACGAAGAGGAAGGCGAGGAGATAGGCCTAGATCCCCGTTTTCTCGACAACGTTTTAGATGAGCTTTATGATTTCGGTGCAGACACagtgaagaaaaggaaaaataaatcccaaaagaaaaaggcaaagaagTGTTCGGAGGAAGATCAAGGTAAAGTTGGGCTCCTCACTGCTGGTATAGATGATGGGGTTGAGAAGAGAGCTCAGGATGGCCACTGTCCCTCTGAACAGAGGAAGGAGGCTGTGGACTCGGGCACCAGCACTGAAAGTCCAGCGGCCCACTCAACAGAAACAACATCACGGGTGGAAGTCGTGACATTTCAAGATCCTTctaagaagaagagaaaaatggTGGAAGCCCCGGCCCCTAGCCTAAAGtTGTCACACACTTCTGTTCAGGTACCTGAAATAAAGGAGAAAacgaaaacaaatacaactgaTTTTAGCCTGGAGAAGGCCCGGTTGGAGGTTCACAGATTCGGCATCACAGGATACCAGAAGGAGCAACAGAGAGTGTTTGAGCAGGAGAGAGCCATCATGCTTGGAGCAAAGCCACCAAAAAAGGAGTATGTCAATTACAAAGTGTACCAACAAATGATCAAGGAGaagaaactgaaagcaaaagAGGACGTGAAAGCGGGCactaacaaaaagaaaagaagagagcACGAAGGAAGAGCTAATAAGAAGTCGTCGTCAAGTGTCTTACCAGCTGGGCAAGTCGGACGCTTTAAAAACGGGGCGTTGGTTCTCAGCTCTAAAGAAATAGAGATGATTAAAACATCCAGAGTGATTAAGTAAGGAGTCAAGGTGTAGATCCGTATtgttgtcagttttgttttttattttgggggaatGGATTGATCACTGATATTTTCTGAGTACCTTATTCACGACTGTAATGATTATGTATTGAACACTGATTACTGGTGTCTATCAGAGGCAGTGGTCACTTGGCATTGTCTGGACACTATGGGTTGCTttcagacccagattagcaagAGCCTTCAACATTACAGTGTTATTATGTAGAGTGGTATGAGACTAGTGCTACTCCAGGCTTCATAGGTGTCTTCAGATACTGGGTAAAGATTATATTGAATAGCTAAACCAATAATGAGTTAAGTGACTGAAAATTTGAAATTAACAAAAGATCCTGGAGATCCCTGTAGTGTATCATCCTTCAGCCCTGGAATAACATCTGAAAGGTGTTAACTGTAGGGCAATTCTTACACCCGGATTAATATCCCTGTACAAAAAAGTTTTGGCAGTTTTACATTCGCTGTACTACTAATATAATACTACCACCTACTGGACAGGCTCTGAAATTGCACAAAGAGATGTCCAGGACAGTGAACAATTCCTTCCCTGCCATCAGTTGCTCACagtgatgtatttgtttatttaatggacTTCTGCTGTTTTTACCCagaactgtaataataaaaaaaaatacattcattgtaaaataaattgtgtatatttccataaaattctgttttataattacaacaaaatacacCTGAGTTTTAATAGTGCTACAAcaatgtaagtaaataaatggaaTACCCATACATTTAACAGGCGGTTCTGCAAGTGTTGTGTTCGGACTCCatataaaccatttt

Function

GO:

id name namespace
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0004164 diphthine synthase activity molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003644 True 1791 mRNA 0.41 7 12883467 12891135

Neighbor

gene id symbol gene type direction distance location
AMCG00003637 NA coding downstream 17714 12862807 ~ 12865753 (-)
AMCG00003640 NA coding downstream 22800 12858276 ~ 12860667 (-)
AMCG00003636 ttc13,LOC106571397 coding downstream 28150 12835517 ~ 12855317 (-)
AMCG00003635 epha7,LOC107567608 coding downstream 258778 12618786 ~ 12624689 (-)
AMCG00003638 epha7 coding downstream 288081 12583137 ~ 12595386 (-)
AMCG00003646 NA coding upstream 14237 12905372 ~ 12906889 (-)
AMCG00003645 NA coding upstream 35560 12926695 ~ 12968156 (-)
AMCG00003650 acbd3,LOC106571761 coding upstream 146557 13037692 ~ 13050392 (-)
AMCG00003651 lin9,LOC107678835,LOC107726751,LOC107697095 coding upstream 164859 13055994 ~ 13065554 (-)
AMCG00003662 xdh,LOC104966294 coding upstream 226231 13117366 ~ 13212180 (-)
G2168 NA non-coding downstream 13516 12869501 ~ 12869951 (-)
G2142 NA non-coding downstream 465131 12417928 ~ 12418336 (-)
G2140 NA non-coding downstream 495536 12387608 ~ 12387931 (-)
G2079 NA non-coding downstream 815209 12068049 ~ 12068258 (-)
G2071 NA non-coding downstream 831976 12051245 ~ 12051491 (-)
G2196 NA non-coding upstream 7296 12898431 ~ 12901945 (-)
G2234 NA non-coding upstream 140793 13031928 ~ 13032764 (-)
G2235 NA non-coding upstream 142104 13033239 ~ 13034060 (-)
G2257 NA non-coding upstream 186513 13077648 ~ 13080021 (-)
G2266 NA non-coding upstream 209377 13100512 ~ 13101318 (-)
AMCG00003625 NA other downstream 805315 12075319 ~ 12078152 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other downstream 943684 11921991 ~ 11939783 (-)
AMCG00003618 NA other downstream 1094192 11743989 ~ 11789275 (-)
AMCG00003595 myo6,LOC106571274 other downstream 1766562 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 1927114 10951084 ~ 10956353 (-)
G2236 NA other upstream 143818 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 180661 13071796 ~ 13116660 (-)
AMCG00003667 NA other upstream 773608 13664743 ~ 13732039 (-)
G2373 esrrg other upstream 1118323 14009458 ~ 14013021 (-)
G2500 NA other upstream 1919651 14810786 ~ 14811331 (-)

Expression


Co-expression Network