AMCG00003648 (LOC106571761)


Basic Information

Item Value
gene id AMCG00003648
gene name LOC106571761
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13025569 ~ 13042597 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003648
GCGGGTGTTAGAACGGGCGGTGCTGCGCCTGCGCGTCTGGCTCTCTTGGTGACGGCGGTGTAAACACGCCGCTGTTAGTTTTGCGGAGACGTGCGCTGCCTGCCGAGGTCCAGTGCCCGGATCCCAGGAAGGACACAGCCAGCGTTTCAAGCGAGATCGCCTTGAAACATGAAACCTCTGGAAGCCGACTCCATGCCGAGCGCCATGCTGAAGTCCAAGATGAGGTCCAGTGCCCACAGTGTGAAGCAATGGCAACTAGCCAGCATTGGCTTTAACCCGCCAGTGGACGAGAAAGCACTGGTCACCACAGAGACCAAGTTCAGCACCTGGACCCCCGTTATCAACAAGACCTCCAACCAGCAGCTTTTCCAGGAGAGGAACAATCTCATTCTTCACTGGTTTGACCTTTGGACTGACAAGCAGAGAAAGCAGTTCATTCATAACGTGCTGATGAGGTGCTCCAGATCCCAACTCAAGTTCACTCGGGACTGGTTCGAAGAGGTCGTTCCTGTCACCAAGCTGGACTTCACTACCGTCCTGCCGCGCATCCTGTCCCTGTACATCCTCTCCTTCCTCAGCCCTCAGGAACTGTGCATGGCGGCCCAGGTCAATTGGCACTGGAAGTTCCTGGCCGAGCAGGACTGCTTGTGGATTCCCAAATGTGTCAAGCGTGGCTGGTTCCTCCCCTATAGCCCCGCAGACAATGAATATGggtcctggaagagacactatGTGGCCTGTGCCAAAGACTTAGACTACCTGACACCACGAGAGGCTGCAGATATGTACGGGACTCTGAATGAGCCGAAGACAGATACAGAGGATCAGGAGGAAAGGTTGAGAGAGCGCTTGATAAGAAAAAGAATATGGGAGAAGGTTGCAGAACACAAAAAAGCTTCACTAACATCAAGACCGCCTTGGCTGAGCAACAGCTGGACTCTAGGGTCACTGAAGAGCAAAGGTCACAATGAGAAGCTTCGGGCGAGTCTGGGCCAGCAGGGTTTGACAGCGGCTTTGGTGCTCATAGGGAACCAGACCCGCTCTCagcactctctctcccagctcCTCCGGCAGGACACACAGAGCCACTTGACACAAGACACTGCCCTGGAGAGGAAGATGATGACCATGTCGATGCAGTCGCTGCCCAAACAgATGAATCTGAGCAGTGGCAGTAGCAATTCTGTATCATTCCCCAAGGCAAGCCCGAGTCAGTCTTCTCCCCGTCTCCTGCTGGTGTCTTCCAGGATACCAGGATACGAGATGCTGTTGTGCAGTGCATGGGTGGATGTCATACCAGTGCTTTATGATTACTATGGAACCACACTGGAAGCCCTGCTGTACCGGGTGGAGCAGGTCCTGCATGGCCAAAGAGCCTGCAGCGTTGGTGTCTTCACGGAGGGACACCCAGGGGAGATTGCGCTTTTGAAAGGCTGCACAGTCAGTCAAAGGACAGTCCTGCACCCCGAGGTGAGACAGTTCTGGGAGAATCTGTCTGGTTTTGTGGTGTCCCGGACGGACGGAGGCAGCCTAGACATATTCTTTCCTCTGGCAGTTTCAGAGACAGGAATGGAGCTGATCTCCAATATTTCGGTTCTGACAGGACTCGATGTGAGTGCTCCTACTGGAGTTGGCACTGGATCTCACCAGCACATTCTCAGCGAGTGGCTCGGCCGAGCGGTGAGCCCCAGCGCCACGTATTTCAGCGCCCCGGCCCTGCTGTGCTGGTGCAGGCAGGCGGAGAGACTGGAGGAGGTTCTGCTGGATCTTCGCAAACAGATGGGACCTCAGCTTGGTGACCTGCGGACGGAAGTGTGCGGAAGAGTCCTggGTCAGTTCCTTTTTGATTCCGTGGGCTTGTCAGAGATTCACACGAATGTGGAGATCGCTCGAGCTGTAGCTGAAGGACTGGCTGCGCTGTCCAAAGAAAACTGTGAGAATCCACTGGAATTTCTTTCTGACTTCCTGCGGAGAGGTGTCAGTCACACGTCCCAAACTGCTACTGCTTTTCTGACTGAGTGTGTTCCTAAAGGAGCCCCCCTCGAACCCCCCGAGACAGCGACGTTGCCAGTGGGCTCTGTGGACCGGCGCACCATGTTTGCCAGGGAGTTGTTTCACAGCGAGAAACGCTACGTCCAGTTGCTGGATGCCGTCAGACTCGTATACGTCACTCCACTCAGAGCCGCTTTATCGTCAAACCGCGCCATCCTGAGCTCTGCCAATGTCCTCATCATCTTCTCTGACATCCTAGACGTCGCGGAGCTCAACAGACAGTTCCTGGACGAGCTGGCAGAGCGGATACAGGAGTGGGGTCCCTCCCAGTGCATCGGGGACGTGTGCGTCAAATTCAGCACCCGACTGAGGGCCTACACTAACTTCTTCAATAACTACACCACCATCCTCAGGACTATTGACAAGTGCAGAGAGATGGTTCCTGCCTTCCGTGCTTTCCTGAAGAGACATGATAAAACCATGGCCACGGAAATAATGAGCTTGCaggacctgctgctgctgcccccccaGCGCTTCGAGGAGTACGTGACTCTCCTGCAAGCGCTCTCCCTGCACACGGCCCCCGAGCACCCCGACCGTGCTCACCTCCGCACCGCGCTAGACACCCTCACACGCTACCGGGACTTTGTTCAACAGCTCAAACAGACCACAGATGGAGATTCGAAGATGTTGGAGACCCAGAAGATGATCCAGAGTTGCCCAAACTTGCTGGAAGCGAACAGATACCTGATCCGAGTGGAAGACGTGGCTCAGCTGAGCTGCTCTGATAAAGAGATTAGCGCTGCCCTCAGGTATGGGCCTCTTTCTGCTGAATTTGGATTCCCCAACATGCAGCTAAAGGCCCTGCTAACTGGCCCTGACTTCGCCACACTTGTtttacacactgtacaacacgcAGGCAACTCACACTTAACACAGATTGCCTTCCACAATCCAAATATTAAGAACGCGTTTGGTCTGAGGGGGCCCAGGCGGCAGTGGGTCTGTGCAGCAGAGACCAATGAAGACAAATTCACTCTGCTGTCAGCCCTGCAGAGTGCCATCAATGCTGCAATTggtgacaaataatgtaaaatgctgGCCTTTGAGTATTTCGTAACAACAGAAGTCCCCAGTCAACTGTTACAGGGTCTGATCGCCTCGGTTGTCTAACTGTACATATAAATCAGctatatttttataaactgaGCACTTCTGATTAGGTAGGCATATGCAAGTGCCATTGAGAGCACAATTGCCTTTTTTCTCATGTGTAACAGCAGAAATCATTGTACAGAATTGAGGTCAGCGCTGTTACACATATTATTCCTAAAATAAACCCAAGGATCTTCCATTGTCTGATTTTTCTAATTTGaaggtcatttattttttcaaatacaaaggATTGTTCCTTCTTTTCCATAGAGCATTGTAGTGAAGGCTGAGGAAAgatgtttaaagtttttttttaaaccattgtaTTGTCTTTTCATATAATAAAGTAAGATTAAACAGCCACAAGTACCACTTTTAGGCTCAAGTGTTACTCTTGCTCTAGCAGTCTGTAGCTAAGTGAtagaatataaaacatgtaaatggaTGGAAATGTTGTATTCCTGTAAATCCCTCAGGTCAGTGTTAGTTAGGGCTGATGAAACAGTTATTAATAATCATGTAAGCTTTCGATTCtgacattttaatcattttcttcATGGTGTATTACATAATCTTCAGCTAAGAtctgtgttttatgtaaaaGATGCAACAGTAACTTGTCTAAATTCGGTTTGCCTATTGTAGCAGCCTCCCTCTTTACTACCTTCCATTACCGTGAAGTGCAATTTTAAAAAGCGACTGATTGATTCAAATAATGTCCCTTGTTCTCCTTGAGCCATAAAAAAAGGAAGTGCCAACAAAATGGGGAATAATAAAAACTCAAGAGGCCGATCTTACAGATAAATGGAAGTTTAATTGAGATTAAATAGATGCTCAAGAATTCTGCACTCGCACTGTACTCATTAAACGGgtgaaagcaatacaaaaaattgttttttccatctttaatgttaaactcatttttttgtttaatttagtttacatACACATCTTCACCTTTGCACCTCAGGCAATTTACAATCTTGTTTAAC
>TU2685
ATGCTCAAGAATTCTGCACTCGCACTGTACTCATTAAACGGgtgaaagcaatacaaaaaattgttttttccatctttaatgttaaactcatttttttgtttaatttagtttacatACACATCTTCACCTTTGCACCTCAGGCAATTTACAATCTTGTTTAACAAtacatcccatcccatcccatctcccccccccccccccaaaaaaaaaggcCAGCATTTAACATCATCAcgggggagaagaaaaacaaaatcgtTACGAACATCTGGAGcatctgaaaacaacaaaacaaaacagaaaagagcaTCGCTGTTCTTGCATACACGAGATATGAACGGGTAAAGGGTCTCTCTGCTCCAGTGAGTGTCTAAGAGGAGGTGCACCACAACTCAAAGATTTATACATCGTGGGGGGAAAAACAGCCCAGGTCAGGTTTCTGTGTCTCGAGACAAGGAACTATCCTGagctgttaaaaaacaaagtgcagaCATTGCTGGGCTGCTTCAAGTTTTGCAAGAGGGAATCAACTTTTGAGTGAATAGTGTCGTAAAGACAAAGCGATATTTAAAATCTTATACACTGGATTGTCTCAGACCTCTGTTAGAAAGACCTTTTACCTGATGTAATGATTGCGCAGGTTTCATTTGCCATTTAATAGTCAAAACATAAGCCCAACAGAATATTGCTTCTAACTACagcatacaaaattaaaaactgatcaAACATCTGTCATTCTGAGAGCCTAGAGAGGTTAGTGACCAATTTTTCTGTGAACACCTATGACTGCACTGGAGAAAAggtgttttgttggtttaaacCCTCGCAGTTACAATTCAGATCAATTCTGACACATTTCAACAGCTTCGGTCAGCTCTGAAGGAAACCCAGAGTAACTTTTAATCGTAAAAGAGTGGGCCATGTGTTTTGTTAAATGGAGACTCTCAAACTGATATACTATGCCTTTCTTTCTCCCTGGCTTTTAAAACGGCTTTGACATTTGCAAGAAGGTGTTGAAATGTGGAagaatgcaatttaaattacttctcctcagtaaaaaaacaacaacaaataaaccataCTCTATCAGTGTGTTATATACAAACTGGgtatcaaagaaaaacaaagcactatGAACAGCTACACTGGACAGGCTGTGGCACAATCACTGACCAGACAGAACTACCCACAAACAGGGTCGTTTTCAGGGCATCGCCAATACACAATTTTCAGATTCAGTTAGGCAGCCTAACCTCAAGACAAAACCAAGTGTAACCTTTAGCTGCCCTTTCAAGAATTTTGGATGTAGCGGGTGAACATGAGGACAATTGTTTGAATGTACTGAGGGCCGAGAAAGGAAACTGCATCTCCAGCTTTGAGGATGACATTAAAATATTcgaaatgtatttcttcagctCCTAAACATGACTCTGAAAACCATGGCACTTGTGAACTCTGTGTTGCTTAATTACAGCATGCAAGCCAGATTGACACCTGCCACACTTtgctaaaacatgttttacatgtttCATTGACTTGAATccaatacatgtatatatgtatatgtatatgtatacatgttctCTGTCTGCCAAGTGTCAATAGGGAGTCCATCGCTTCCCCTTGAATTGACAGCTGAGCTGCTTGGTTTTATATTAAGCAAGATGAAGTAGATGTCCAGTTATACCCGTGACAAGATGCCATGATACAGGCTAACAGATGTCACTGCCCTCCATGTCATTCTGCTGAAAcagatttcaatttcaaatctagagtccagaaaaacacagaatggCCAGGCAAAGCAGGGGTCGGGTTGATCATGCTATTGCAATCTCTGTTCCATGATCGATATCAACCCAAAGGAGAAAGGCACACAGGAAAACTGGTAGCATGCAAGGTGTAACACACTCCACACTATAAATGCTAACTTAGTGTTCCGATACTGGATGAAAAAcgacaaaaatatataagtaaagCCGTCCAATGTTCTCTATACAATGCCCCAGAATGTTTATTAAAGTAATCCTATTCCtggctgtgattatttattgcCACAGTAAACTATTCTCCCAAAGTAATATGTTAAATTGCGAACTGCAAAGTAAAGTTTTCTAAAAGAGACCGAACTCGGGGTGTACAGAACAACCAAGCAACTGCCCAAAATAAAGCATGCAacggggaaaaacaaaacctgaacGTTATTTCAGCAAACCTGCACAAGGAAGCAAGAGGAAGACAGAAAGGGTCTGGGTTTAGAAGGGTCCATCAAACCTGACTGTAAATGTTGAGTAGGCCTGattggaaagagaaaaaacaactatatagtttagaaatgtaaaaacatgaaacTGTTTTTGGTTACCCTTCTCCTGTGAAAGATCAGTGCTtggtcttatatatatatttacacatttaagaaGCTACAAACATACTGCATACGCCCCATCATCCCACCAATGCTCCTGCCCTTGGAATGCAAGTTTCAATGCTGTTTAGTGCATTTCCTCATAAAACCACACTGCTTATTCTCACCAAGCCCCTCCGAGAGAAATCATACACGATAAAAACATCCACGTTAAAGAAATGAGAGCCTGTCGAAGATAGGGGATGCTTACAAGAGATATTATTTGAACTGGGTTTTGATGTTTGATGTCACAAGATTTAATACCTTAAATGACCAAACTCAACTTCCCACAGAGAAATAAAGGTAGGACAGATAACGTCatattttgtcttgtttctcattgcagacaatcacacaatcacacattccACTGTCCAGGAAGCAAATGGTTATGACAGAAGTTTATTGAACATCTGATCATTATTTTTGAACCCgattcaaaatattgtatacagtttaattgatgatcttagtttttttttttttgtttgttttgttttttttaagtaatctgCAACATCACACATTAAATGCTATAATCAAAGTagtttaaaaacttttaaaataaactgctctTCATGAATAGCAATAACTGGGATTTAGGATTCTTGTGACCCTCAAACCGATTTTTTTGTAAGCATGAATGGCATTTGCTTTTTGATGCTTTGCATTTGACAGCAGAAACCAAAGGAACCTTCTGACTATGTAAAATATATCCTGTGTGTTCAAACAGAGAACACTTTCTTCAGAATAAagtggggaaaaacaaataagtaggTATTTCCATTAAGAAACAGATCATTTGGGAGTGACAGACGGTGTGCTGTCAGCATTAATAAACTGATTGTTTTAAGGTTGACCTATTGCAACGTGACCATCTTTCGTATCTTTGAGAGGAAAACATTTACAGCTTTACCAGACACAATACGGTCTCCATTCTTGCAATCGAACTGGGCTAATTACAACACTGCAGATTtcgtatttattttgtacactaAAAAGGTGTTATAAGTGTACAGACCTCTGCTTGACGTTTCTACTGTAAATGGGATCAACAACCCTTGAATGCAGACGCTTTTGCTAATTTTTCCTGCTGTACGACATGTAACAACTCATTATTTACCCCATGCAAGAAACACCACCCACACACCTCATATAAAACACCAGCTTTTCCACAAATCAAACCGGGGAATTATTTAATCCTGGGGGATTTCCCTATTCCCAGGACAGAAGGACAGAACATCTCCAACCCTTGCCTTGGACAATGCCAACCATTCAGGTTTTGCATCTTGGATTACTGGTCATCTTGAATAATTAGGCCAGTTATTTGTTCCAGTAGGGCTTGGCTCTCCGCGAACAGGCTTGGACAGCACAACCCTTTGGAAACCACAAGGGTCTGGTCACCTCCCACTTGCTCAACAGGATTAATGAAGGAGCTCCATGATAGTAACGCACCGCTAAAGGGAGCGCCTCATGCCAGCTATAAAGCGATGAGATGTACAATCTGTGGGCTGGTTCGTGCGAGCCGTCAGTCTTGGGACACATGATCAGAACCCCCCTGTTTCTGTTGTTGGtgcttttattaatgtattttattttaattggctttTATTTCATGCACCAGATCTAAGGAACATTTTACACCCCATCACTCATCCTAGACATGTTTGCACAGAATCCGTAACGGCAGACGGAGTAAAGAACTAAAGGACATTATGGTGAAGAGGAAACTTGCCGAGGATGATGGGTAAGGCAGTGCTTTGCTGAATAAAAGACCTATGAACGTCACACTTCAATTAACAGAGCAAAAGGCggcatttttattgttattctcattattattattaatttattttccctcctAAGCGAAAGATAAGATGAGACGCAGAGTGTGGAAATGGCCATTCTGCACATAACTTCCTCACCAAGAAGAGAGATGTTGGACTTCTCCACAAGGAAACTACCAAGCCACACTACGCCCCAGCCTGCACAACCCCCAGTGTCccatgacatttttgttttatctagTATAATACACTCTGTAGTAGACGGCTTTTGATCTCCATAGCGAGTATGAGTTGTCGAATTTGAGTAGGTACACTCCCCTCCCAGGATACTGATGGCTGCCGGCGTAGACCTCCTCGTGGCAGTCTCGCCGGTACACCGGCACTATCTCGTCCACCTGGGGCTTGTTGGTGTTCTTTTTGGCTTTGTCTTCCTCACTCTGGTTTTCACcttcttcctcctcctcatcgtCGCTGGACTCACTGACATGGACGCTGACTGCTGTGTTTGGAGAATCTGTCCATTCAAAGTACACTCCAAAGCCAATGTCATAGTGGTCGGTGGCAAACTCCCAGAAGAGGTAGGAGCCCTCCTCGTGCGTGGGCACGCGCACCGTCACCACCTCTCCCCGGCCCACGGTGATCACCGAGTCGGCGTCCTGTCGGATCTTCTCCTTGAAGTCTTTGATCTGCGGCCGTGTCCACATGGAGGGGGCAGCAATCACAGGGGACACCT

Function

NR:

description
PREDICTED: Golgi resident protein GCP60-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003648 False 4139 mRNA 0.50 21 13025569 13037598
TU2685 True 4924 TUCP 0.41 2 13037437 13042597

Neighbor

gene id symbol gene type direction distance location
AMCG00003649 ccdc28a coding upstream 1330 13020377 ~ 13024239 (+)
AMCG00003641 NA coding upstream 99513 12918837 ~ 12926056 (+)
AMCG00003642 NA coding upstream 123611 12891168 ~ 12901958 (+)
AMCG00003633 trim67,LOC106571401 coding upstream 145212 12872513 ~ 12880357 (+)
AMCG00003639 exoc8 coding upstream 157098 12866417 ~ 12868471 (+)
AMCG00003647 NA coding downstream 10832 13053429 ~ 13055181 (+)
AMCG00003653 NA coding downstream 48496 13091093 ~ 13092094 (+)
AMCG00003654 cnih4,LOC106584110 coding downstream 199454 13242051 ~ 13246855 (+)
AMCG00003656 NA coding downstream 277606 13320203 ~ 13325222 (+)
AMCG00003666 NA coding downstream 695005 13737602 ~ 13744368 (+)
G2139 NA non-coding upstream 637511 12387603 ~ 12388058 (+)
G2125 NA non-coding upstream 765926 12220322 ~ 12259643 (+)
G2086 NA non-coding upstream 936583 12087537 ~ 12088986 (+)
G2042 NA non-coding upstream 997376 12026126 ~ 12028193 (+)
G2027 NA non-coding upstream 1119381 11905983 ~ 11906188 (+)
G2250 NA non-coding downstream 32091 13074688 ~ 13080021 (+)
G2264 NA non-coding downstream 55964 13098561 ~ 13101316 (+)
G2267 NA non-coding downstream 59860 13102457 ~ 13102666 (+)
G2281 NA non-coding downstream 184638 13227235 ~ 13228357 (+)
G2294 NA non-coding downstream 204712 13247309 ~ 13254443 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 108567 12902566 ~ 12917002 (+)
AMCG00003614 NA other upstream 1295578 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 1448240 11573731 ~ 11577329 (+)
AMCG00003606 NA other upstream 1533972 11490185 ~ 11491597 (+)
AMCG00003604 NA other upstream 1542638 11461663 ~ 11482931 (+)
AMCG00003655 xdh other downstream 112463 13155060 ~ 13206839 (+)
G2440 NA other downstream 1375919 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 1809155 14851752 ~ 14866758 (+)
AMCG00003702 NA other downstream 2258483 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 2982274 16024871 ~ 16039640 (+)

Expression


Co-expression Network