AMCG00003650 (acbd3,LOC106571761)


Basic Information

Item Value
gene id AMCG00003650
gene name acbd3,LOC106571761
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13037692 ~ 13050392 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003650
ATGAGTGAACAGCCACTGATGCCTCCGCTTCCACACGGCTACAAAGTAACGTGTTTCCAGGCAACAGCCGGGGGAGCCTCGTTCCCGCCCACATCCTGCCGGCACTCCCGGAAGTTCCGGTGCAGAAATGAAGCGGAAGTAGGTACGTGGCTGCTCCAGCTGACACTCGGCATGATGGCGATGGAGGTGCAGGGCTCCGACCCCAACAGTGGCAGCTCCAGCCGTCTGGAAGTCTCCATAGACGGCTTGACTTTGAGCCCCGATCCGGAGGGCGACCAGGAGCGCAGCGAGAGGCTGGCCCCTCAACCCCCGGGGCAGGGAGAAGAAGTCGCGGGTCCGTCTGAGGAAAAAGATGGGGACGAGGGCGAGACTGCCAAGTCCATGGAAAGGAAGTGGGGCTTTCCTCTCCAGGAGCTGTATGGCCTGGCGCTGAAATTCTTTAAAGATAAAGATGGCAAAGCCTTCCACCCAACATATGAAGAAAAACTTCGGCTTGTTGCTCTACACAAGCAAGTGTTACTTGGCCCATATAACCCAGATGCTTGTCCAGAAGTGGGATTCTTTGATGTCCTTGGAAACGACAGAAGGAAGGAATGGGCCTCTTTAGGGACCATGCAGAAGGAAGATGCGATGGTTGAATTTTTAAAGTTGCTGAACAAATGCTGTAATTTATTCGCACCCTACGTTACATCTCACAAAATAGAGAAGGAGGAGCAGGAAAGGAAAAGgctggaggaggagcagcgcagacggctggaggaggaagagcgGGAGCGCCAGCGGCAGGAGCAGGAGCGCCGCCaacgggaggaggaggagcgcctgcgcagggaggaggaggagcgccGGCAGGCCGAGGAGGAGCGCGTGCGCATGGAGCAGCAGAAACAGCAGATCATGGCCGCCCTGAACGCACAGACCGCAGTGCAGTTCCAGCAGTACGCAGCCCAGCAGTACCCAGGAAACCCCGAGCAGCAGCAGGTGCTGATCCGCCAGCTCCAGGAGCAGCACTACCAGCAGTACATGCAGCAGCTCTACCAGGTGCAGCTGGCACAGCAGCAGGCGGCGCTACAGAAGCAGCAGGAGGCAGCGATCGTGGCGTCCACAGTGGCGGCGAAGATCAACGTGGCCTTCCCAGGGGAGAGTCCCACGGTGAACGGACAGCCCAACGCACACATGGACAGCCTGGAGAAGGAGTCCGAGCTGGAGGCCACCGAGGAGCTCACCGAAAACGGCCCCAAAGGCATAAGTAATGCAGGTTCGTGCGCAAGACGCTCTATTACGATGAGGCTCGTTTATAAGGAGTGTTTAATGAGAGGATCCAGACACTGCAaaaAGGTGTCCCCTGTGATTGCTGCCCCCTCCATGTGGACACGGCCGCAGATCAAAGACTTCAAGGAGAAGATCCGACAGGACGCCGACTCGGTGATCACCGTGGGCCGGGGAGAGGTGGTGACGGTGCGCGTGCCCACGCACGAGGAGGGCTCCTACCTCTTCTGGGAGTTTGCCACCGACCACTATGACATTGGCTTTGGAGTGTACTTTGAATGGACAGATTCTCCAAACACAGCAGTCAGCGTCCATGTCAGTGAGTCCAGCGacgatgaggaggaggaagaagGTGAAAACCAGAGTGAGGAAGACAAAGCCAAAAAGAACACCAACAAGCCCCAGGTGGACGAGATAGTGCCGGTGTACCGGCGAGACTGCCACGAGGAGGTCTACGCCGGCAGCCATCAGTATCCTGGGAGGGGAGTGTACCTACTCAAATTCGACAACTCATACTCGCTATGGAGATCAAAAGCCGTCTACTACAGAGTatgCTCCAGATGTTCGTAa

Function

symbol description
acbd3 Predicted to enable fatty-acyl-CoA binding activity. Predicted to be active in Golgi membrane. Orthologous to human ACBD3 (acyl-CoA binding domain containing 3).

NR:

description
PREDICTED: Golgi resident protein GCP60-like isoform X3

GO: NA

KEGG:

id description
K23935 ACBD3; golgi resident protein GCP60

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003650 True 1839 mRNA 0.57 10 13037692 13050392

Neighbor

gene id symbol gene type direction distance location
AMCG00003645 NA coding downstream 69536 12926695 ~ 12968156 (-)
AMCG00003646 NA coding downstream 130803 12905372 ~ 12906889 (-)
AMCG00003644 NA coding downstream 146557 12883467 ~ 12891135 (-)
AMCG00003637 NA coding downstream 171939 12862807 ~ 12865753 (-)
AMCG00003640 NA coding downstream 177025 12858276 ~ 12860667 (-)
AMCG00003651 lin9,LOC107678835,LOC107726751,LOC107697095 coding upstream 5602 13055994 ~ 13065554 (-)
AMCG00003662 xdh,LOC104966294 coding upstream 66974 13117366 ~ 13212180 (-)
AMCG00003660 NA coding upstream 167149 13217541 ~ 13233616 (-)
AMCG00003661 NA coding upstream 183681 13234073 ~ 13236047 (-)
AMCG00003658 wdr26,LOC103044372 coding upstream 200706 13251098 ~ 13270245 (-)
G2235 NA non-coding downstream 3632 13033239 ~ 13034060 (-)
G2234 NA non-coding downstream 4928 13031928 ~ 13032764 (-)
G2196 NA non-coding downstream 135747 12898431 ~ 12901945 (-)
G2168 NA non-coding downstream 167741 12869501 ~ 12869951 (-)
G2142 NA non-coding downstream 619356 12417928 ~ 12418336 (-)
G2257 NA non-coding upstream 27256 13077648 ~ 13080021 (-)
G2266 NA non-coding upstream 50120 13100512 ~ 13101318 (-)
G2285 NA non-coding upstream 81228 13131620 ~ 13143528 (-)
G2287 NA non-coding upstream 122240 13172632 ~ 13178172 (-)
G2291 xdh,LOC107752765,LOC107592779,LOC107733164,LOC107674096 non-coding upstream 183103 13233495 ~ 13236993 (-)
G2236 NA other downstream 2203 13034953 ~ 13035489 (-)
AMCG00003625 NA other downstream 959540 12075319 ~ 12078152 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other downstream 1097909 11921991 ~ 11939783 (-)
AMCG00003618 NA other downstream 1248417 11743989 ~ 11789275 (-)
AMCG00003595 myo6,LOC106571274 other downstream 1920787 11063121 ~ 11116905 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 21404 13071796 ~ 13116660 (-)
AMCG00003667 NA other upstream 614351 13664743 ~ 13732039 (-)
G2373 esrrg other upstream 959066 14009458 ~ 14013021 (-)
G2500 NA other upstream 1760394 14810786 ~ 14811331 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other upstream 2465281 15515673 ~ 15591730 (-)

Expression


Co-expression Network