AMCG00003654 (cnih4,LOC106584110)


Basic Information

Item Value
gene id AMCG00003654
gene name cnih4,LOC106584110
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13242051 ~ 13246855 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003654
AGAAGATGGAGGCGGCGGTGTTCATCCTCTCTCTGATCGACTGCTGTGCTTTAATTTTCCTGTCAGTGTACTTTATAATTACTCTCTCAGATCTAGAGTGTGATTACATTAACTCAAGATCTTGCTGttccaaattaaacaaaTGGGTTGTTCCAGAATTGGTAGGTCAGGGAATAGCCACAACTCTGATGCTGGTTTCATTGCACTGGTTTGTCTTCCTTCTCAATCTGCCTGTTGCAGCGTGGAACATGTACAGACTTATAAAGGTTCCTCTGGGGAATATGGGAGTTTTTGACCCAACAGAGATTCACAATCGAGGGCAGCTGAAATCCCACATGAAGGAGGCGATGATCAAACTGGGCTTCCACcttctgtgtttctttatttacttgtaCAGCATGATCCTGGCGTTAATCAACGACTGACGTCTACAGCACCTTTGGACTGAAGCTGCCAAATCATGAACGTCTCCTTTAACTGAGCATTTGTTCTCATTTGTTCTCGATATGTAATCTGCCAGCAGGAATCAAATCAACACCCCAGCATCACATGTGACAATGGAAAATGATACATCAGGCTTCGACACTTAATCTGTGGGAGACaccactttgtgtgtgtgtgtgttacacagCTTAAGCAAAACCTGGatcaacctgtaatttaaacacTTGACTTGTGTTTCTGGTGTTCTGTGCTACGTTATCTATAAGGGGTGATATTTTGTTCTGCCAGGACACTTTTACAACCCAGATTCATTCATTGTGGCATCCATGATACTCTGGTCCTATTTTAGAAGAATTAGCTTATTCCCAAACTCACTCCAGCGATGACCAATCAAATGCCTGTATAACTACAACCAAgatgagtgacggttcttctcCATTTGCTGCTGTAAATAACCATAACCATTTAGGCACTGGGAAGCAATAGCTGCTTAACTTTCATTGTAATTGCCAAGTCCTTTAGCCATTGACGACAGTGTTCACAGTGTAAAATCAGGTTTCCCTCTTCTCAACAGACAAATCATATTCCACGAAGAAGCCACTCTTACTTAATGAAGTCTTTCTGCTACTTTCATGGTGTGGTTAGCAGTGTTCTCACACTCCTGGGTAGCCCaaaactagtgctaatctggtctgtgaaaccagccctttaCGCAAGATTAATtgggataaaaaacaaaacaaaacttttatgTATCATGCATTGTATGAATTCAAAAAAGTTCAGTCAGTTTCAAGTCACTGTTCATTGTACAGAGGTTTAAGAAGTATTCAGACTTTGTAGagttaaacttattttttttaaaagcttttgaaatgtgcagtttctTAAATAAATTTACTTTCTCCAAATGCCTTTTTTCCTTATTAGTGGTTTAGTGCTTTACAATGTAGCCACACAATTTTTCTAAGTTCTTTGTTAAACAGAAAGGTGGGTTTATTATCACGAAGAGTATGAAGGAAACGTATGCATCGTAAGACTAAATATTTGATGTAGCTCAACAAAAAAGAGGACATATGGGCCCACCTGGAAGTTAAATTGCAAGTGTATTTACAATAGCAGTAGGAGGCAGTGCTGGCtgatgggggggaaaaaactatcAAATCCCACTGTGAGGGTTCACTGGGATCcttcaaaaataatgtattaaaaataattctaaaaCTAAACTTGTCAGATTCTTAGCTGTACTTTTACACCATATTCTTAAAAGAAATATTTCAAGATTAT

Function

symbol description
cnih4 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in COPII-coated ER to Golgi transport vesicle and endoplasmic reticulum membrane. Orthologous to human CNIH4 (cornichon family AMPA receptor auxiliary protein 4).

NR:

description
PREDICTED: protein cornichon homolog 4 isoform X1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20368 CNIH, ERV14; protein cornichon

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003654 True 1734 mRNA 0.39 5 13242051 13246855

Neighbor

gene id symbol gene type direction distance location
AMCG00003653 NA coding upstream 149957 13091093 ~ 13092094 (+)
AMCG00003647 NA coding upstream 186870 13053429 ~ 13055181 (+)
AMCG00003649 ccdc28a coding upstream 217812 13020377 ~ 13024239 (+)
AMCG00003641 NA coding upstream 315995 12918837 ~ 12926056 (+)
AMCG00003642 NA coding upstream 340093 12891168 ~ 12901958 (+)
AMCG00003656 NA coding downstream 73348 13320203 ~ 13325222 (+)
AMCG00003666 NA coding downstream 490747 13737602 ~ 13744368 (+)
AMCG00003668 NA coding downstream 550424 13797279 ~ 13797599 (+)
AMCG00003670 esrrga,LOC107582200,LOC107733169 coding downstream 762616 14009471 ~ 14013046 (+)
AMCG00003669 esrrga,LOC107719475 coding downstream 809596 14056451 ~ 14067694 (+)
G2281 NA non-coding upstream 13694 13227235 ~ 13228357 (+)
G2267 NA non-coding upstream 139385 13102457 ~ 13102666 (+)
G2264 NA non-coding upstream 140735 13098561 ~ 13101316 (+)
G2250 NA non-coding upstream 162030 13074688 ~ 13080021 (+)
G2139 NA non-coding upstream 853993 12387603 ~ 12388058 (+)
G2294 NA non-coding downstream 454 13247309 ~ 13254443 (+)
G2323 NA non-coding downstream 168076 13414931 ~ 13415156 (+)
G2326 NA non-coding downstream 238737 13485592 ~ 13485807 (+)
G2329 NA non-coding downstream 261032 13507887 ~ 13509930 (+)
G2330 NA non-coding downstream 263383 13510238 ~ 13510674 (+)
AMCG00003655 xdh other upstream 35212 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 199454 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 325049 12902566 ~ 12917002 (+)
AMCG00003614 NA other upstream 1512060 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 1664722 11573731 ~ 11577329 (+)
G2440 NA other downstream 1171661 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 1604897 14851752 ~ 14866758 (+)
AMCG00003702 NA other downstream 2054225 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 2778016 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 3785715 17032570 ~ 17042594 (+)

Expression


Co-expression Network