AMCG00003664 (tgfb2)


Basic Information

Item Value
gene id AMCG00003664
gene name tgfb2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13509791 ~ 13514900 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003664
ATGTCATTCCCTCAGTATTATACAACCCTTACTTTAGACGCCTCAGGTTTAATGTCACATCAATGGAGAAGAACTCCTCAAACCTGGTGAAGGCTGAACTGCGAGTTTTCCGAATTCAAAACCCGAAGGCGAGAGTCTTCGAGCAGAGGATAGAGCTGTATCAGgTCCTTGGTCACAAAGACCTAACATCACCAAACCAGCGCTACATTGACAGCAAAGTGGTGAAAACGAGAACGGAGGGAGAATGGCTGTCTTTTGACGTTACGGAAGCCGTGAGCGAGTGGCTTCAACACAGAGGCAAGAACATTACAGTTGCCGCACATGTAACCCAGAATAGAAACAATGGATTCAAAATAAGTTTGCACTGCCCCTGCTGCACGTTTGTGCCTTCGAACAATAACATCATACCAAATAAGAGCGAAGAACTGGAAACTAGATTTGCAGGTTTCGATGACGGCGTCCATGCAGAGAATTCGAAACAACTCAATAAGAGGAAACATAGCAGGAAGAATCCCCACCTCTTACTGATGCTGCTCCCATCATACAGACTGGAAACCCCACACAGTAATCGAAGGAAGAAACGGGCTCTGGACGCTGCCTACTGTTCCAAgAATGTACAGGACAACTGCTGCTTGCGCCCGTTATTCATTGACTTTAAGAGGGATCTTGGTTGGAAATGGATCCATGAACCAAAAGGATATAATGCAAATTTCTGTGCAGGGGCATGCCCATATTTATGGAGTGCTGATACTCAACATACAAAGGTACTTGGTATGTACAATACAATGAACCCAGAAGCATCTGCGTCACCATGCTGTGTTTCCCAAGACTTAGAACCTCTTACCATCCTGTATTTCATCGGCAAAACCCCCAAAATCGAACAGCTATCCAACATGATTGTTAAGTCT

Function

symbol description
tgfb2 Predicted to enable cytokine activity; type II transforming growth factor beta receptor binding activity; and type III transforming growth factor beta receptor binding activity. Acts upstream of or within roof of mouth development and sclerotome development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including mandibular arch skeleton; mesoderm; otic placode; pericardial region; and periocular mesenchyme. Human ortholog(s) of this gene implicated in Loeys-Dietz syndrome 4 and colorectal cancer. Orthologous to human TGFB2 (transforming growth factor beta 2).

NR:

description
PREDICTED: transforming growth factor beta-2

GO:

id name namespace
GO:0060022 hard palate development biological_process
GO:0016049 cell growth biological_process
GO:0005615 extracellular space cellular_component
GO:0005160 transforming growth factor beta receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K13376 TGFB2; transforming growth factor beta-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003664 True 908 mRNA 0.45 6 13509791 13514900

Neighbor

gene id symbol gene type direction distance location
AMCG00003663 NA coding downstream 110944 13387807 ~ 13398847 (-)
AMCG00003659 adcy3,LOC107688975 coding downstream 192893 13290299 ~ 13316898 (-)
AMCG00003657 NA coding downstream 226277 13281451 ~ 13283514 (-)
AMCG00003658 wdr26,LOC103044372 coding downstream 239546 13251098 ~ 13270245 (-)
AMCG00003661 NA coding downstream 273744 13234073 ~ 13236047 (-)
AMCG00003665 NA coding upstream 30451 13545351 ~ 13562197 (-)
AMCG00003677 LOC107733121,LOC107582237 coding upstream 823526 14338426 ~ 14354533 (-)
AMCG00003685 NA coding upstream 872655 14387555 ~ 14394904 (-)
AMCG00003686 cdc42bpa coding upstream 911385 14426285 ~ 14461583 (-)
AMCG00003684 cdc42bpa coding upstream 962024 14476924 ~ 14483379 (-)
G2337 NA non-coding downstream 861 13507892 ~ 13508930 (-)
G2324 NA non-coding downstream 94635 13414861 ~ 13415156 (-)
G2291 xdh,LOC107752765,LOC107592779,LOC107733164,LOC107674096 non-coding downstream 272798 13233495 ~ 13236993 (-)
G2287 NA non-coding downstream 331619 13172632 ~ 13178172 (-)
G2285 NA non-coding downstream 366263 13131620 ~ 13143528 (-)
G2443 fzd3b,LOC107729283,LOC107734193,LOC107665105,LOC107589599,LOC108270052 non-coding upstream 894336 14409236 ~ 14410253 (-)
G2444 LOC108270052,LOC108428681 non-coding upstream 900479 14415379 ~ 14415673 (-)
G2445 NA non-coding upstream 903678 14418578 ~ 14419732 (-)
G2447 NA non-coding upstream 905831 14420731 ~ 14421315 (-)
G2494 NA non-coding upstream 1184059 14698959 ~ 14699237 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other downstream 393131 13071796 ~ 13116660 (-)
G2236 NA other downstream 474302 13034953 ~ 13035489 (-)
AMCG00003625 NA other downstream 1431639 12075319 ~ 12078152 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other downstream 1570008 11921991 ~ 11939783 (-)
AMCG00003618 NA other downstream 1720516 11743989 ~ 11789275 (-)
AMCG00003667 NA other upstream 149843 13664743 ~ 13732039 (-)
G2373 esrrg other upstream 494558 14009458 ~ 14013021 (-)
G2500 NA other upstream 1295886 14810786 ~ 14811331 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other upstream 2000773 15515673 ~ 15591730 (-)
AMCG00003734 NA other upstream 3092510 16607410 ~ 16628401 (-)

Expression


Co-expression Network