AMCG00003665


Basic Information

Item Value
gene id AMCG00003665
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13545351 ~ 13562197 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003665
ATGGCGGCGTCTGTGGAGACAACACATGGCAGCCTTGACCAAGAGTACAGtgCTTCTGATGCAGAGGATGAAGTCTCCGGGGACAGTGGTTCCTCTGCGGGAGAAGCCGATGACGACAGTGTCAGCGGCGAGGGGTCTGCGAGTGACGGAGACAAGAGCGAGGGCGAGGATGGAGAAGAGTCTGCTCCACAGGACAACAACCCCAACGCTGGCTGGGCTGAAGCCATGGCTAAAATTCTGCACAAGAAAACGCCAGAGAGCAGACCGACCATACTGCTGAAGAACAAGGAGCTGGACAAACCGGACGTTGTGCAAGACCGTGAGACTGAGCGCAATCTCCAAAGGATTGCAACCAgAGGAGTGGTCCAGTTGTTCAACGCGGTTCGGAAGCACCAGAAGAACATCGATGAGAAGGTGAAGGAGGTCGGAGCGTCCGAGAGAAAGCGTGCAAAGCTGCTGTCGTCGGTCTCCAAGACAGACTTCATCAATGTCCTCAGGGGGACCGAAGCAGCGGCAAAGCCAGATAAAAGCAAACAGgtTGAGGTAAAGACGGAAGAGAAGGCCTCATGGAGCATTCTGCGCGATGACTTCATGATGGGAGCCACCATGAAAGACTGGGACAAGGAGAGCGATGATGGGATTAAAAAAGAACCGCAAGATGATGACTATGACAGCGATTCTGACTGA

Function

GO: NA

KEGG:

id description
ko00230 Purine metabolism
ko03020 RNA polymerase
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003665 True 687 mRNA 0.54 5 13545351 13562197

Neighbor

gene id symbol gene type direction distance location
AMCG00003664 tgfb2 coding downstream 30451 13509791 ~ 13514900 (-)
AMCG00003663 NA coding downstream 146504 13387807 ~ 13398847 (-)
AMCG00003659 adcy3,LOC107688975 coding downstream 228453 13290299 ~ 13316898 (-)
AMCG00003657 NA coding downstream 261837 13281451 ~ 13283514 (-)
AMCG00003658 wdr26,LOC103044372 coding downstream 275106 13251098 ~ 13270245 (-)
AMCG00003677 LOC107733121,LOC107582237 coding upstream 776229 14338426 ~ 14354533 (-)
AMCG00003685 NA coding upstream 825358 14387555 ~ 14394904 (-)
AMCG00003686 cdc42bpa coding upstream 864088 14426285 ~ 14461583 (-)
AMCG00003684 cdc42bpa coding upstream 914727 14476924 ~ 14483379 (-)
AMCG00003687 NA coding upstream 966444 14528641 ~ 14531680 (-)
G2337 NA non-coding downstream 36421 13507892 ~ 13508930 (-)
G2324 NA non-coding downstream 130195 13414861 ~ 13415156 (-)
G2291 xdh,LOC107752765,LOC107592779,LOC107733164,LOC107674096 non-coding downstream 308358 13233495 ~ 13236993 (-)
G2287 NA non-coding downstream 367179 13172632 ~ 13178172 (-)
G2285 NA non-coding downstream 401823 13131620 ~ 13143528 (-)
G2443 fzd3b,LOC107729283,LOC107734193,LOC107665105,LOC107589599,LOC108270052 non-coding upstream 847039 14409236 ~ 14410253 (-)
G2444 LOC108270052,LOC108428681 non-coding upstream 853182 14415379 ~ 14415673 (-)
G2445 NA non-coding upstream 856381 14418578 ~ 14419732 (-)
G2447 NA non-coding upstream 858534 14420731 ~ 14421315 (-)
G2494 NA non-coding upstream 1136762 14698959 ~ 14699237 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other downstream 428691 13071796 ~ 13116660 (-)
G2236 NA other downstream 509862 13034953 ~ 13035489 (-)
AMCG00003625 NA other downstream 1467199 12075319 ~ 12078152 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other downstream 1605568 11921991 ~ 11939783 (-)
AMCG00003618 NA other downstream 1756076 11743989 ~ 11789275 (-)
AMCG00003667 NA other upstream 102546 13664743 ~ 13732039 (-)
G2373 esrrg other upstream 447261 14009458 ~ 14013021 (-)
G2500 NA other upstream 1248589 14810786 ~ 14811331 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other upstream 1953476 15515673 ~ 15591730 (-)
AMCG00003734 NA other upstream 3045213 16607410 ~ 16628401 (-)

Expression


Co-expression Network