AMCG00003666


Basic Information

Item Value
gene id AMCG00003666
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13737602 ~ 13744368 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003666
GCACTTTCATAGAACCATGGACGAGCTGGTCCACGATCTGGTGTCGGCGCTGGAGGAGAGCTCGGAGCAGGCCCGGGGGGGCTATGCAGACATGGGGGAGCACTCGCTGGCGGTGGGCTGCCTGCTGAAGCGCCAGGCCCGGAAGCGGCGCGGACGGAAGCGGCGCTCGGACAACGCGCACCCCCCCTGGGAGCCCTGCCACTATCTTAGCGAGGGCTCCGAGTCGAGCCCCGAGGAGCACAGCAAGGACTACCGCGGCACAAGTCACGGCAAGGACAACAGCGACTCAGACGATCCTCTCCTCGGGGCCAAACGCCGCCACCCCTCGGCGCTGGAGGCCGGCCGTGCCAAGAGACCCCTGTGGCACGAAGACCCGGCGGCTGAGAGCTTGGCGTGTCGGAGTCTGCGCCGGCGGAGGAAGGTGAAACGCATGGCTGTGGATCCGCCAGCTGAGGTGGCCAGCATACTGCCACTCGCCCAACAGCAGGGCAGCAGTCGCGATAATCTGGAAGGACCGGCCAAGGAAGTAGGCAAGAGCAAAATCAAGAAGAGGAAGTTGGCATCCAGCCGACCGGGGCCAGACGTGGCGGACGAAGGGGTGGTGGTGGAAAGCGAGGACCACGGCCAGACcaacaaagacaaaatggaCTACGAAGAGCACAAGGGCTCGGACGAAGAGATGAGTGACAGTGAAACCAGCAGCCTCAGCAACAGTAGCGATGGTGGCTTGTATACCAATGATGAGGGCAGACAAGGTGACGACGAGCAGAGCGACTGGTTCTACGAGGGCGAGCCTGGCGGGGCCTGTGGCATCGCCGGGGTCGTGCCCTGGTGGGAGAAGGAGGATTCCTCGGACCTGGAGAAGGAGCTGTCTGACCCCGTCTTCAGCAGTATACTGAGCGGCTCCTTCCCCCTCATGTCGGAGGATGCCCGGGGAGGTCAGTGCGTGCCCATTGCTCCTCGGCTCAGAAAGGGCTTTAGCTTGATTGCTCGAGTGTTGGCCGTTGATGGCCCTAGCACGAACTGTGAAGTGTTGGCCTGTCAGTCTCGCACGCGAGAGATTTCAAGCCAGGCTGAATCGTCTACATGGGATGCCCTCCTCGATAAGCAAAGCAGCAGCGCAGCAGTCCTCTGG

Function

GO: NA

KEGG:

id description
K17569 GPATCH2; G patch domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003666 True 1135 mRNA 0.63 4 13737602 13744368

Neighbor

gene id symbol gene type direction distance location
AMCG00003656 NA coding upstream 412380 13320203 ~ 13325222 (+)
AMCG00003654 cnih4,LOC106584110 coding upstream 490747 13242051 ~ 13246855 (+)
AMCG00003653 NA coding upstream 645508 13091093 ~ 13092094 (+)
AMCG00003647 NA coding upstream 682421 13053429 ~ 13055181 (+)
AMCG00003649 ccdc28a coding upstream 713363 13020377 ~ 13024239 (+)
AMCG00003668 NA coding downstream 52911 13797279 ~ 13797599 (+)
AMCG00003670 esrrga,LOC107582200,LOC107733169 coding downstream 265103 14009471 ~ 14013046 (+)
AMCG00003669 esrrga,LOC107719475 coding downstream 312083 14056451 ~ 14067694 (+)
AMCG00003673 NA coding downstream 347645 14092013 ~ 14190098 (+)
AMCG00003675 NA coding downstream 447500 14191868 ~ 14204400 (+)
G2336 tgfb2,LOC106584161,LOC107689010,LOC106605021,LOC107725266 non-coding upstream 196448 13539972 ~ 13541154 (+)
G2334 NA non-coding upstream 222537 13514660 ~ 13515065 (+)
G2333 NA non-coding upstream 224604 13512600 ~ 13512998 (+)
G2332 NA non-coding upstream 225071 13512194 ~ 13512531 (+)
G2331 NA non-coding upstream 225773 13511535 ~ 13511829 (+)
G2380 NA non-coding downstream 334744 14079112 ~ 14079327 (+)
G2446 NA non-coding downstream 676363 14420731 ~ 14421310 (+)
G2517 NA non-coding downstream 1261978 15006346 ~ 15030368 (+)
G2563 NA non-coding downstream 1370261 15114629 ~ 15114837 (+)
G2564 NA non-coding downstream 1371337 15115705 ~ 15116972 (+)
AMCG00003655 xdh other upstream 530763 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 695005 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 820600 12902566 ~ 12917002 (+)
AMCG00003614 NA other upstream 2007611 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 2160273 11573731 ~ 11577329 (+)
G2440 NA other downstream 674148 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 1107384 14851752 ~ 14866758 (+)
AMCG00003702 NA other downstream 1556712 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 2280503 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 3288202 17032570 ~ 17042594 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location