AMCG00003667


Basic Information

Item Value
gene id AMCG00003667
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13664743 ~ 13732039 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003667
aTTGCTGAGGAAAACAGAAGCAAAGAAAACAGTGCTGCTATTCAGATCCAGGCCTGGTTCAGAGGATGCGCAGTTCGAGCCTATCTGAGGCacataaacagaaaagcaaccctCATCCAGAAGAGATGGCGAGGCTACACCGCACGAATGTACTTTAGGCAAATGGTAAAGAcagcatattttattatgaagatGAATTTCTACAATGAGATGGCTGTCAGGATTCAAAAAAGATGGAGAGGCTACTATATCagaaaatatgtacataattaCTATGCAAGGAAGCACTACTTGGAAGGCCTGACATTGATGAATGAAAGAATCAGAAAACAGCTGGTGGAGTTTGCAGACATACAGAAGAGCGAGAGGGAACGTATGGCACTAGatagagaagagagaaaattgGTTTACCAAGCACAAAAGATGCATTACCTCCTCAGCACACAACAGTGCCCTGGTGTATTCAACTCACCATACAGACCTTTCCCGGATGAGATGGAGCTCAGACTGCAGAGTGTCAGAGCTCTGAGCCCGGCAGCAGAGAGCACCCGGCGGCTGGCCCCTGCCACCCGGCCCATCACACAGCCTCTGCCACCCATCCCCAGACAGAGACCGCAGGGGCCCTTCCGAGATCCCGCTGAAGTATTGCAGCAGCGGTACAAGCCTCTGGAGCCAACCTTGCGCGTGGCCACATCAATCACGTCAGAGGAGGAGGCCAGAGAGGAGCAGAGGCGGGAGGAGTGGAGGGGCCGCGTGAACGAAGAGCTGTTCCGCCCTTTCTCTAACACACACAAGAATAAGAAATACGAGGGGATGCTCCACACCTCAACCAAGTTTGAGCAGGTGGCCTTTGGCAGCAAACACTTCAGAGAAGAGAATGTAGACAAACTGAAGGAAAAGAAGCTTTCTTGCAGCCAGAGCGTCATTAACCTGCTGCAAAGCAAACTCTCTGGCAAAGATCccctaataaaaaaacatgttttagctCGCACCCTGCTGCAATTACAAGGAGAAGTgattcacatatttaaaatcctGAATCCTGGGATGGACAAAGCCTCAAGGATTAATTCTGTCTTGGCACTGGAGGCCACACATGGAAGTAAATATGGTGTGTTTAGAATTGAAAATATGATCGTCACACAAAGAGCTGTGTGGACCAGCTTCCCTGCCAGACTTTCTCTCTGGGTTCCTTCATGGAAGAAGCTGGATAAATGTTATGGCTCTAAAAATCACACCGTAACGATGCCATTCAAAACTCTGTTTACCCCAGTGCACCTCTTCGACACATATGGACAGATGTATTCCAACGCTGGAAATGTTGTATCTGCAGAAGCGCAATTGCTGGGACAGTGGGACGCCGCCTGCTTAGCTCTCATGCAGACTGACAGCCATATGCAGGGAAAGCGGAACCAGAATGGAGATGCTGAACAAACTGGGCAGGGGGGGAACCCGGCATGTGCTTTAGGGTGGAGGCTGGGAGGCAGTAAGGAAAAACACACTGTTATATTGGGTGAACgggaattaaaacacacagagtaCCTCTTTCTGAACTTCAGGGGCAGA
>TU2847
CATAGAGACGAGTGTAAACGCTCAGGACCATGGCCAGACTCGTGCAGCTACACAGGCGCATTGAGGGCGTTAAACACGAATATTTTAACAGGAAcaggaTTGCTGAGGAAAACAGAAGCAAAGAAAACAGTGCTGCTATTCAGATCCAGGCCTGGTTCAGAGGATGCGCAGTTCGAGCCTATCTGAGGTGACACGTTGGTTTACAGTCCTGTGAAAACAGCTTTGGACCCTATTAGATAAAGATACAGTCATAGGTTTGGAGAACTAATGGATGCCTTCTTGCATCATCAGTGTGAGAGATGTATCTTCATTAGTATGATGATCATAATCCAGAACATTAAAGGGCAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003667 True 1566 mRNA 0.49 14 13664743 13729698
TU2847 False 350 lncRNA 0.45 2 13729447 13732039

Neighbor

gene id symbol gene type direction distance location
AMCG00003665 NA coding downstream 102546 13545351 ~ 13562197 (-)
AMCG00003664 tgfb2 coding downstream 149843 13509791 ~ 13514900 (-)
AMCG00003663 NA coding downstream 265896 13387807 ~ 13398847 (-)
AMCG00003659 adcy3,LOC107688975 coding downstream 347845 13290299 ~ 13316898 (-)
AMCG00003657 NA coding downstream 381229 13281451 ~ 13283514 (-)
AMCG00003677 LOC107733121,LOC107582237 coding upstream 606387 14338426 ~ 14354533 (-)
AMCG00003685 NA coding upstream 655516 14387555 ~ 14394904 (-)
AMCG00003686 cdc42bpa coding upstream 694246 14426285 ~ 14461583 (-)
AMCG00003684 cdc42bpa coding upstream 744885 14476924 ~ 14483379 (-)
AMCG00003687 NA coding upstream 796602 14528641 ~ 14531680 (-)
G2337 NA non-coding downstream 155813 13507892 ~ 13508930 (-)
G2324 NA non-coding downstream 249587 13414861 ~ 13415156 (-)
G2291 xdh,LOC107752765,LOC107592779,LOC107733164,LOC107674096 non-coding downstream 427750 13233495 ~ 13236993 (-)
G2287 NA non-coding downstream 486571 13172632 ~ 13178172 (-)
G2285 NA non-coding downstream 521215 13131620 ~ 13143528 (-)
G2443 fzd3b,LOC107729283,LOC107734193,LOC107665105,LOC107589599,LOC108270052 non-coding upstream 677197 14409236 ~ 14410253 (-)
G2444 LOC108270052,LOC108428681 non-coding upstream 683340 14415379 ~ 14415673 (-)
G2445 NA non-coding upstream 686539 14418578 ~ 14419732 (-)
G2447 NA non-coding upstream 688692 14420731 ~ 14421315 (-)
G2494 NA non-coding upstream 966920 14698959 ~ 14699237 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other downstream 548083 13071796 ~ 13116660 (-)
G2236 NA other downstream 629254 13034953 ~ 13035489 (-)
AMCG00003625 NA other downstream 1586591 12075319 ~ 12078152 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other downstream 1724960 11921991 ~ 11939783 (-)
AMCG00003618 NA other downstream 1875468 11743989 ~ 11789275 (-)
G2373 esrrg other upstream 277419 14009458 ~ 14013021 (-)
G2500 NA other upstream 1078747 14810786 ~ 14811331 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other upstream 1783634 15515673 ~ 15591730 (-)
AMCG00003734 NA other upstream 2875371 16607410 ~ 16628401 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other upstream 3136293 16868332 ~ 16871475 (-)

Expression


Co-expression Network