AMCG00003671


Basic Information

Item Value
gene id AMCG00003671
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14233934 ~ 14292763 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003671
CCTGGGCCAGTGGACCCGCCTCTCATATCTGAAATCCACCCAAAGAGGGCAACCATCACTTGGCAGCACCCGTCTCGGCCCAACGGTCTCATCACTCGCTATAACATCTACCAGAATGGCGAGTTGAAGGCCGTGGTGCCTGGCAATAGCACAGCATACGTAGCAGCTCATTTACACCCCTACACACACTATACAATCCAGGTGGAGGGCTGTACGGCTGTGGGGTGTTCCCTGTCTCCCGAGTCCCATTCCTTCCATACATCACCAGGGCCACCCGAAGACATCTCAGCTCCGCGGCTCTTCTCAGACACGCCCACCTCTGTGCTACTGTCGTGGGAACCTCCCCGACAGCCCAACGGTGAGGTAAGGAACTATACAGTTGAGAGGAGGCTCTGGGGCACCCAACAGGTCTCTACTGTGGTGACCGTACAAGCCCATGAGCCCCTGAGTCATTTGGACAGCTCCGCGGCCTTGAGTCCGTGGACCACCTATGAGTACCGCATCGTGGTGGCCACCCTGAACGGAGGCGTGAACAGCAGCGGCTGGACGGAAGTCACGACGAGACCCTCGAGACCCGCTGGTCTGAAGCAACCTGAGGTGTCCGTTTTGGGACCAGATGCAGTCCAGGTTGTGTGGAGCGCTCCTCTCATTTCCAACGGGGAGATTCTCCGCTATGAGATTCGCCTGCCAGACCCCCGCATTGCCATTACGAACACCTCGCTGTCCAACTACACGGTGACCAATCTGGTCCCTCACACCAACTACTCTGTCACCATCCTCGCTTGCTCTGGGGGCAGTGGTCTCATCGGAGGATGTACTGAGAGCTTGCCCACTTCGGTGACTACATTACCCACAATGCCACAGGGCCTCAGCCCCCTCTCAGTCACTGCTGTTAGTGAGTCCTTTCTTGCCATTTCCTGGCAACCGCCATCAAGACCTAATGGGCCAAATTTGAAATATGAACTGCTGAGACGAAAAACCCACCAACCACTGCTCTCCCATCCCCCTGAAGATTTGAATCTGTGGTACAATATTTACGCAGGACCCAAATTGTTTTATGAAGATAAAGGCCTTAGCAGGTTTACAACATATCAATACAAGCTGCTCGTACATAATGATGTGGGTTATGCCTCTGGGGAGGAGGTCACTGGACGCACTCTGGCTGGCATTCCCATCAGTGGAAGCACCCTGATGGCTCAGACTTTGAACCATACAGCTATAGAAGTGGCCTGGACTCACCCATCGCTGCAGGCCCTGCAGGGAGAGGTGGAGCTCTACTCACTCTTCATTAACTCATCCCACTACAACCGCTCCGTCGCGTTTCCCCCTGGCGTGAACTCCACGGTGATTGGGGACCTGCGCCCAAACACACAGTACCAGCTCTCCATCTGGGTCTTCAACGGGGCTCATGCAGTTGACAGCAAGGAGGTCTTCTCTACCACAAGTGATGGagAGCCTGAGGGGGTGTTCCCTCCCGAGGTCATTACCCTCAACAGCACAGCTGTGCGTGTCATCTGGACAGCTCCCCTGAACCCGAACGGCGTGGTCACCGAGTACTCCGTGTACGTCAACGACCTGCAGCACCGCACGGAACTGGACTCGCCGGGCTCCTTCGTACTGGGAGGCCTCTTGCCCTTCACTGTTTACAACATCCAGGTGGAGGTGTGCACTGTCTACGCGTGTGTGAAGAGCAACGGGACCCAGATCACCACAGTGGAGGATGAGCCCGAGGACATGGCGGCTCCTTACATGCATGTCATCAGCTCAAGGTCCCTCCGCGTTGACTGGACGTCCCCCGGCCGCCCCAATGGCATCATCTTGGGCTACGATGTGCACAGACGGACCCAGCGGCCCTGTGAGGAGGCCCTGCCACACCAAGCCGGGCAGCAGTGCCTGTATGTGGAGTGCCTCCGAGACCAGGGGGTTTGCGGGAGCTTGTGCTACCAGCCAGAACATCAGGTACACGGTAGTTTCAGCCGCAGTGCATCCGACCTGCaggaagggagaggggaaaTGCTCGGCCCGTACGTCTGCTGCAGTGGAGCTGTGTACAGCAGTCAGCCTGGATATGAGTGTTGCCAAGACAAATACATCCCGGCTCCTGACTTTCCCACACCGGTGTGCTGTGGTGGCCAGTTTCTCAAGCCCCTGCTGGACTTTCAGTGCTGTAGTGGGTATTATGTCAGGGTTTTGCCAGGCCAGGCTCGGGTGTCCGTTGGGCTGGGGGACGCCTGCTGTGATGGAAACCCCTACTACTCCTCAGGAAGGCAGATTTGCTGTGCCGAGACCCTCCACGATGGCTTTCACAAGCAGTGCTGCGGGGGACAGCTGGCAAACAGAGACCTGGTCTGCTGCGGCAACGAAGAGCAAGGAGCCGTGCACACGCCAGCACATGGTGTACAACAACCCTCACACCACATTTGCGGTGTCTTTTCCTCGCTGTCTGTAGGCATGGCGTGCTGTGGAGAGGAGTATGTGAACGTGTCGAGTACAGTGTGCTGTACCAGCCGCGACGGGGTCTCCGTGCCGCACCTGAAGGAGAGTGAAGCGGCACTGGGCTGCTGCGGGGCCGAACTCATCCCATCTGCAGAGGCGTGCTGCAATGGGGTGGGGTACAACCCCTTGAAATATGTCTGTGCTGACAGGTCTTCACATGGCATACAGTTCAAGCAAGACTGCAGCCCCAGCATATTGTGCCCCATCTCCATGGCGGCCGGGGCGTTCTGTGGCAAGTGTGATTTGAACCCAGCAGAGACCATCTGCACTTGGGTGAAAGGGGTCCCCTCAGCCTCCCCGTACGCAGCTGCGCAGGGGGTCCTGTGCCCCACCCCGGAGGAGCTGGTCTACTCAGGAGGGCCGAGCAGATACACCTACACAGATGCTGACCTGGAGCCCGACACTACATATGAGTACAGAGTGGCAGCCTGGAACAGCTTCGGTCGGGGGTTCAGTCCCTTCAGAGGTGGTACCACCGAGCCAGATGTTCCCCAGGGCGTGAGTGCACCAACGTGGAGCCGCGTGGATGACCGGGAAGACATCCTACACTTGGACTGGCGGCCTCCAGTGCGGCCCAATGGTCATATCAGGCACTATATAATTCTCCGGGATGGGCGAGAGAGATACCGGGGATTGGAGACCAGCTTTACTGATACAGGCGGGATTCTGCCGTACCAGGAGTATGTGTACCAGCTTCGGGCCTGCACTGTTGTGGGCTGCACTGAGAGCAGTAGGGTAGTTGCAGTGACTGTCCAGGGAGTTCCAGAGGATGTCCATCCGCCAACAGTCACCGCCCTGAGCCCCTGGGCTCTGCGGCTAAGCTGGAGAGTACCTGTGAAACCGAACGGCATCATCAGAGAGTACCACATCAATCAGACGGGCCGAGGCCTTATCCACACCGAGAGCCGCAGCGGCCTGCGTCACTCTGTCACAGGTCTCAAGCCCCATACTAACTACAGCTTCACGGTGAGCGCCTGCACATCTGCTGGATGCAGTGCAAGTCAGCCATCTATGGGCCGCACTCTGCAAGCTGCACCCCGAGGAGTGTGGTCGAGGCCGCGCCATGTGATCATCAGCTCGGCCGCGGTGGAGCTGTACTGGACCGAGCCGCTGGAGCTCAACGGGATCGTATCTCAGTACCAGCTGATCCGCGATGGCGTGTCCATATTCTCCGGCGACAGAGGAAACCGGAGCTACACAGACACTGGCCTGCAGCCCAACACCAGGTATGTATACCAGCTAGAAGCCAGCACGGGAGGAGGGAGCAACATGAGTGACAAATATGTGATTCAGACCCCGGTGTCATCTCCCGGGAGGATTCCAGATCCATATAATGTCAGCAGTATCGGACCTCGCTCCATCTTTGTCTCCTGGACACCCCCAGGAATATTTAACACCACCATGCCTGTGGACTACAGTGTTCTTTTAAACATTGCTAGTGATCGGCCATTGATCAGAGCAGCGGGTCGGGACCTGTTCCTGTTGGTGGAGGGGCTCAGTCCGTTCACAGACTACGAAATACGAATACAGGCTTGTCAGGAAGACGGTTGTGGTGTGGGCAGGGGGGCCCATGTGAGGACATCCGAAGCGTCTCCAGAAGATCTCGACCCCCCCACCGTTACAGCATCGGGGTCTGCGGTCATCGAGGTGCGATGGAAGCCGCCACAGAAACCCAATGGGGTCATAACGGCCTACTTCATTCACAGCCCCGAGTTAAAGACCATTCAGATCAGTGAAGTGTCGTTTCCTTGCAAACAGACAGTGAAGCATTGA

Function

GO: NA

KEGG:

id description
K19636 USH2A; usherin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003671 True 4269 mRNA 0.57 21 14233934 14292763

Neighbor

gene id symbol gene type direction distance location
AMCG00003676 NA coding upstream 11030 14220132 ~ 14222904 (+)
AMCG00003675 NA coding upstream 29534 14191868 ~ 14204400 (+)
AMCG00003673 NA coding upstream 43836 14092013 ~ 14190098 (+)
AMCG00003669 esrrga,LOC107719475 coding upstream 166240 14056451 ~ 14067694 (+)
AMCG00003670 esrrga,LOC107582200,LOC107733169 coding upstream 220888 14009471 ~ 14013046 (+)
AMCG00003672 NA coding downstream 6804 14299567 ~ 14328685 (+)
AMCG00003674 NA coding downstream 36767 14329530 ~ 14335669 (+)
AMCG00003679 nrbp1,LOC103372645 coding downstream 73553 14366316 ~ 14382592 (+)
AMCG00003680 NA coding downstream 92375 14385138 ~ 14388550 (+)
AMCG00003678 LOC108270052,LOC107665105,LOC107729283,LOC108428681,LOC107589599 coding downstream 115666 14408429 ~ 14416083 (+)
G2380 NA non-coding upstream 154607 14079112 ~ 14079327 (+)
G2336 tgfb2,LOC106584161,LOC107689010,LOC106605021,LOC107725266 non-coding upstream 692780 13539972 ~ 13541154 (+)
G2334 NA non-coding upstream 718869 13514660 ~ 13515065 (+)
G2333 NA non-coding upstream 720936 13512600 ~ 13512998 (+)
G2332 NA non-coding upstream 721403 13512194 ~ 13512531 (+)
G2446 NA non-coding downstream 127968 14420731 ~ 14421310 (+)
G2517 NA non-coding downstream 713583 15006346 ~ 15030368 (+)
G2563 NA non-coding downstream 821866 15114629 ~ 15114837 (+)
G2564 NA non-coding downstream 822942 15115705 ~ 15116972 (+)
G2571 NA non-coding downstream 835833 15128596 ~ 15130200 (+)
AMCG00003655 xdh other upstream 1027095 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 1191337 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 1316932 12902566 ~ 12917002 (+)
AMCG00003614 NA other upstream 2503943 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 2656605 11573731 ~ 11577329 (+)
G2440 NA other downstream 125753 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 558989 14851752 ~ 14866758 (+)
AMCG00003702 NA other downstream 1008317 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 1732108 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 2739807 17032570 ~ 17042594 (+)

Expression


Co-expression Network