AMCG00003682


Basic Information

Item Value
gene id AMCG00003682
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14564528 ~ 14580910 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003682
ACAGCTTTCGCGCATGCGCGGATGTGCTACTTCCTAAACTGAGTGTGAGCCCATGTGAGCGGCAGCAACACGGATGAGAGGCAGCTGTGCGTTTCTGCTCAGGCCTTTTGAACACGCAGGCTGAAGATGGCCACAACGCAGTGGACCAGTGTGTCTCCTGCCGTGGCTGTCAATGCCACCAACTGCTTCAGCAAGAAAGACGAGAGCCCAGAGCTGCAGGGGTTGAGGTTTGGCGGTGTCCCTGTGGTACTTCTGATGGATTTTGTCTTCTTCATAATCCTGCTGGTGATCTTTGCCATCATTAGGAAGACAGTGTGGGGATTTGGGAGACTTGCGATGGTTTTCACAGAACCGTCACACAGGAGATACGCTAGGCTGTCCTCTTCCATGTCAACATCAGAGGAACCTGAATACCGGAagGGGTTCTTCTCCTTGGTGGCGTTTGTGGTCCGACTGGATGCAGACAAGATTCAGGAGAAGTGTGGGAAGGATGCCATCCTGTACCTTTCCTTCCAGCGGCATCTCATTTTCCTCCTGGCCGTCTTCACCGTCATGTCTGTGGCCATTATCCTGCCCGTCAACCTCTCCGGAAACCTGTTCGAAGCTGACCCTTATAATTTTGGCCGAACAACAATAGGAAATCTGCAGAAAGGCTACAACCTTCTATGGGTACACACTGTGTTTGCTGTGCTCTACCTCATCCTCACAGTGATCGCAATGAGACATCACACCTCTAATATGAAAAGCATGGAGAAAGACACCGTAACGCACAGCTTATTTATTACTTCCATGCCTGAATATGCAAGTGAAGATTCTATCAAGATACACTTCAGGACAAGGGCGGAGAAAAACCTGGTGTACTACAGAAAATTCCTGGAGCGCGAAGGAAAGCGAGCTCTAATTAACCCAAAGCTCTGTGGTTATCCCTGCTGTTGCAAAACGAAGTTCTGTCAGGAGGTGGATGCCATTGATTATTACACTGACAAGGAGAAAAAACTGGATGAGGAGCTTTCTAGTAGAAAGGAGGATGTGTACGGCAAGCGTCTGGGTATGGCCTTCGTCACCCTGCAGAATGAGGCAATGACATCCCTTGTGCTGAAAGACTTCAATGCTATAAACTGCACTGGGTGCAAATGTCCCCAGGAGCCCCAGAGTTCGTCCTACATCGAGGCCCTCAAAGTGAAGCAGTGGGATGTCAGCTATGCTCCAGATCCCAAAAATATTTACTGGGAGAACTTGTCAACTCAGGGGGTCCGCTGGTGGTTCAGGTGCCTCATCCTCAACTTCCTGCTCTTCCTTTTGCTGTTCTTCCTCACCACCCCCTCCATTATCATCACCACCATAGACAAGTTCAACATCACCAAGCCCATCTACTATCTGAATAACGCGGTTATCAGCCAGTTCTTCCCCTCGTTCCTCCTCTGGGCGTTCTCCTCTCTGCTGCCAACCATCGTCTATTACTCCACGTTTGTTGAAGCCCACTGGACCAGTTTAGATCTCTTCTTTCAATGGCTGTTTGACACCAAATTTCTGGCACTGGCCAAGCTGAGGTTTGAGTGTGTGTTCCTGCCCAACCAAGGGGCCTTCTTTGTGAACTACATCATCGCGGCTGCCCTCGTAGGGAGTGGGATGGAACTCCTCCGTGTGCCAAATCTTCTGATCTTCAGCATCCGCATGGCCATGGCGCGCTCGGCCGCAGAGAGGAAATTGGTTGAACAGAACCAAGCCACTGAGTTTGAGTGTGGAGCCACGTATGCCTGGATGCTGTCGTCCTTCACAGTGATCATGGCTTACAGTATCACCTGTCCGGTTATTGTCCCCTTTGGTCTGCTCTACATGATTTTGAAGCACTTGGTGGACAAACACAACCTGTACTTTGCTTACCTGCCCGCCCCTCTGGACATGAAGATCCATTACACAGCGGTGAACCAGGCCCTGTCCGCGCCAATCATTTGCCTGTTCTGGCTGTACTTCTTCTCCGTGCTGAGGACAGgtTTTACAACCGACACGTCCCTGTTCACGCTAGTGGTTTTGGGCGTCACCATTTCGATCTGCATCGGTTACACCTGCTTTGGACACTTTAAGTACCTGAGTCCACATAATTACAAGATAAACGAAGAAGTAGACGGAACGCACAACGTGAATCCGCAGCCTGTCTATGTGCCCAAGGTGCTTCAGTCAGCACCCAGCCAACCTGCCTCCCTGGACCGCAAAGTTCAGTCTTATGGGGCTGTGGAAACCAGTCCCTCTCCATCAGACAACCCAGGCAGTGCCTCGGTGCCAGAGCCAGGTCCGTCACACGCCTAGGACACATTTCTGTCTTCCTCTACAGTGCTGTGGACGGCACGAAGGGCCACCGTATCcacaacagtaacaataatgGAAGGGGAGCCCAGTTTAAGGCTTTGTTCTTTGAAATGGATGACTCTGAGGCCTTTGCTACCAAAGTACAATTTGCTGCACTCCTTCCAACTCCACATAAAGTACAGGTGATTCATCAGAAACAACATTCATATGAAAACACTAAGCACCTTCTGCTAGGCTTTTAGGCAGCACAGTAGTATCCTCAATAACTTAATGATCTAGATATACGTTTTATATAACTGCCCTAGCTACATATTTTCTCTTTCGTGTTTTCCAAATTGGCTGCCATTCATAGATTCTTAGAGCACGCAGCTGGGACCGATGGACAGGACTGTGGGGTCTTCGTCTTCTCTCCACACTGCCGTAACGAGGGATGAGAAGCCCTGGCAAGTTGCAACTAGTCCTGGCAACGTCTTAGTTGAATTGATGTTGTCCAGATTTGAGTCCagggctgcacacacacactgacattcctgtttCCTTTCCATTGGGGACACAACATCTGTTTTTATGGAACCCGTATTGGTTTTGATGTTACTAGAAGAGCAATGCCATGATGTTCTGTGACAAGAGTTGGAACAGTCTACACTgtccattataaataaatgattcacTCACATCGGGAACACACTACTAGTCCTGCCACTCAGTCACTGTTATACATAAACGGCTGCGGTTTCGCCAGCTTGACGTTACGCTCTTGcacttttaaagaaatgttttaaatacaagacCACAACCTTCACGCTTTACATGCGGTGGGTACAGGGAGCCGGGTGTCACTCTCACTGCTGTTACGGTCGGTGACATGCAGACTTTATAGAGAGGAAGTGAGGCAGAAATTGTACTCAGTCTGGATAAACCAAAATTAGTTTTTATCAACAGTGCTTTTAGTtatttgcctttatttttaacacacgttgtgtgttagctgggacacattttatttcacaggcTACACAGAAAATACATCTGTAATGTTTCAGTAGAATAACACTGTTCATGTGTTAATGTTTTCCGTTTTAAAGAAACTAAtcctctttaaaaacaaaaagaaactaaCTACtcttattgttatatttgttcgatatgtttaatgtttaataaagaaCTGGACGTTTTTATTCTGGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003682 True 3497 mRNA 0.48 21 14564528 14580910

Neighbor

gene id symbol gene type direction distance location
AMCG00003681 NA coding upstream 6335 14555990 ~ 14558193 (+)
AMCG00003683 NA coding upstream 16400 14540544 ~ 14548128 (+)
AMCG00003678 LOC108270052,LOC107665105,LOC107729283,LOC108428681,LOC107589599 coding upstream 148445 14408429 ~ 14416083 (+)
AMCG00003680 NA coding upstream 175978 14385138 ~ 14388550 (+)
AMCG00003679 nrbp1,LOC103372645 coding upstream 181936 14366316 ~ 14382592 (+)
AMCG00003688 NA coding downstream 27076 14607986 ~ 14617192 (+)
AMCG00003691 NA coding downstream 415987 14996897 ~ 15005277 (+)
AMCG00003696 NA coding downstream 438498 15019408 ~ 15054371 (+)
AMCG00003695 NA coding downstream 484106 15065016 ~ 15096524 (+)
AMCG00003693 NA coding downstream 523834 15104744 ~ 15121566 (+)
G2446 NA non-coding upstream 143218 14420731 ~ 14421310 (+)
G2380 NA non-coding upstream 485201 14079112 ~ 14079327 (+)
G2336 tgfb2,LOC106584161,LOC107689010,LOC106605021,LOC107725266 non-coding upstream 1023374 13539972 ~ 13541154 (+)
G2334 NA non-coding upstream 1049463 13514660 ~ 13515065 (+)
G2333 NA non-coding upstream 1051530 13512600 ~ 13512998 (+)
G2517 NA non-coding downstream 425436 15006346 ~ 15030368 (+)
G2563 NA non-coding downstream 533719 15114629 ~ 15114837 (+)
G2564 NA non-coding downstream 534795 15115705 ~ 15116972 (+)
G2571 NA non-coding downstream 547686 15128596 ~ 15130200 (+)
G2619 NA non-coding downstream 792285 15373195 ~ 15377637 (+)
G2440 NA other upstream 144796 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 1357689 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 1521931 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 1647526 12902566 ~ 12917002 (+)
AMCG00003614 NA other upstream 2834537 11725083 ~ 11729991 (+)
AMCG00003690 NA other downstream 270842 14851752 ~ 14866758 (+)
AMCG00003702 NA other downstream 720170 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 1443961 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 2451660 17032570 ~ 17042594 (+)
G3047 NA other downstream 3100907 17681817 ~ 17683988 (+)

Expression


Co-expression Network