AMCG00003685


Basic Information

Item Value
gene id AMCG00003685
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14387555 ~ 14394904 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003685
CGCAAAATGGCGTCCTCGGCGCGAGACGGGGGCAGAGGAGCACCAGCGCCGTCCACAGCGCGTGAACCGGGACTgaacaaaggctgtgaataacTGGGTCACGTGTGACAAACCACGAGAGATTTGAATTTTACTGAGCAAGGATGGCATTTGCTCCCACCAAAATGATGAATGGCTTGAAGATGCAGACAAAGATGAGCACCTGGACGCCCTTAAACCATCAGCAAACTAATGACAAGGTGTTTGAAGAAAGACGGGATCTGCTTGGCAAGTGGTTTGACAAGTGGACGGACTCCCAGCGCAAGCAGGTCCTGCAGGACTTTTTCCAGAGGTGCTCCAAGGCTCAGCTGCGCTTCGCCGGTCAGGTCGTGCACAGCCGAGTCCCAGAAGAAGCCCTCGACTTCACCACTCAGCTGCCCCGGGTGCTGGCGCTCTACGTGTTCTCCTTCCTGGACCCCCGCAGCCTGTGCCGCTGTGCGCAGGTGAGCTGGCACTGGAAGCATCTGACAGAGGTGGACCAGCTGTGGATGCCCAAGTGTCTGCGACTCGGCTGGTACATCAacttcacccccaccccctttgaGCAAGGCGTCTGGAAGAGGCACTACATAGAGACGGTCAAGGAGCTCCACGTCAGTCGGCCGAAGACTCCCCAGAAGGAGCAGTTTGTTGTGCCAGAGGTGAGGCCAATCGGCAGTGAAGACCCGGCCCTGACAGCGAGCCGCTCCAGGCTGGTCCAGTCCGCAAACCTCTCCCTGAAGGGGAAGAGCGCCGGAGTGAGAGGCGCGGGGCAGCCGCCATGGAGGGGCTCTGACAAGCACCCGACTGACACCCTGCGCTTCAACTACCTGGAGAACTTCGACCCCATAGAGCAGGCACGCCTGGCGCAAAGCAAAGGCAAGGGGACAGCTACCAATCTTAGCAaaccagaaaacacaaaaaagaaacccCTCTCTGATTCAGCCTACAAACTGCGCAAGGCGAAGTCACTCATGTTCCTATCGCCGGATTCGAGTTCTGCCCAGCAGGCACACGGCCGACCGAACTGGGCGACACACCAATCCGAGGAATACCCCATCACCAAGGCAACTGCCAAGACAATGGCACAGAAGACAGAGTGGAATGCCGGGATGTATCCCCGTCCTGTGAGACCCCCGGTGCCCAAGATGAGTGAGAAGGGATTGAGGGCGTCCCAGCGCACACAAAGGAGCTCCCCATCAGTGGCACTGTTTGAGGGGCAGCCATGGAAAATACCTGCAGAGCACGAATCTGAAGAAGACTGAGCCGAGAAAGCCTGTCCAGAGACAGCACGGCCCCTAGAAACGCCATCATGACTGCAGCTCTGGACAAGGTATTCATTTTGATGGATAAGGGAGTTGACATTTCTTGGagacaaactttttttcttgttttgtattaatacagtGTTTAATGAATAATTTGCTGGTTTTAAATCCAGTGGACTGTAGCCCATTGATGATGTTGGTTAACCAATTAGCATATGATCTATTTCAAAGAGACCAAAACAGATCAAATCTATGTGGATCTTTTCaatcttattttgtaaatattttcagcATGATTTCAACCTCTCTAACATCTGTAGTCAGGTTTTACATAAAGTCTAGTAATTAAAGATTGAGGACTGTCTGTAACCTGACAATAGCATCCATACTGCTGTAATGAGTAACtttacaacaaataataaaaaacactttattcttgaaagcattacaaaaacagtAATCTACATCAATTACCTTTTtcatcaatttaaattattgcaaaacaaaaacagtggtTAATTCAGATATAATGTATAGTGGCTTCAAGTGATGTAGTTAAAGTCTTTGGTCTTCAAGGAAGGAATGATTCTACTGATATACAATAAAGGAGTTAAGTAAATCATGGGGAAACCTAACTGACAATGCTTTTGAGGTTTGTTTTGAATGAGACCTTTAAATCACTTCaagtcaatatttgttttctccaaTTGTAGACTGTATTGAGTTCAGCTGAGCCGACAAAGAAGTTTGGCTTTAAGATAAAGAAGTGATCTATCTACAGTTCAGTCAACTGattatattttgtgtgaatATTTCAGCGCATAATCACAATATGTTccataaggaaaaaataaaagtttatattcTGACTAAAGTACTGttcacatttgcattatttagaTGTATTTGTAGTCAGTCTTCAAACCTTCAGTGTGCAGTAAATTCACATGGTCACCTCAATCCCTGCTGTGACTTTTTGAATCCTTAAATAAAGTTCCCTGAAGTTACAGTGGCAGCTGCATTCATCTGCAACAGGCAGGCAGATTTCTTCAGTCTTGCATTCTTATCTTCTACACATGTAGGGGATAGACTACACTTGTGAACAAAGAGTGAAGTCAGACAACCATggacaatatttaaatataaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K10299 FBXO16; F-box protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003685 True 2442 mRNA 0.46 9 14387555 14394904

Neighbor

gene id symbol gene type direction distance location
AMCG00003677 LOC107733121,LOC107582237 coding downstream 33022 14338426 ~ 14354533 (-)
AMCG00003665 NA coding downstream 825358 13545351 ~ 13562197 (-)
AMCG00003664 tgfb2 coding downstream 872655 13509791 ~ 13514900 (-)
AMCG00003663 NA coding downstream 988708 13387807 ~ 13398847 (-)
AMCG00003659 adcy3,LOC107688975 coding downstream 1070657 13290299 ~ 13316898 (-)
AMCG00003686 cdc42bpa coding upstream 31381 14426285 ~ 14461583 (-)
AMCG00003684 cdc42bpa coding upstream 82020 14476924 ~ 14483379 (-)
AMCG00003687 NA coding upstream 133737 14528641 ~ 14531680 (-)
AMCG00003689 NA coding upstream 222559 14617463 ~ 14644456 (-)
AMCG00003692 NA coding upstream 611513 15006417 ~ 15016678 (-)
G2337 NA non-coding downstream 878625 13507892 ~ 13508930 (-)
G2324 NA non-coding downstream 972399 13414861 ~ 13415156 (-)
G2291 xdh,LOC107752765,LOC107592779,LOC107733164,LOC107674096 non-coding downstream 1150562 13233495 ~ 13236993 (-)
G2287 NA non-coding downstream 1209383 13172632 ~ 13178172 (-)
G2285 NA non-coding downstream 1244027 13131620 ~ 13143528 (-)
G2443 fzd3b,LOC107729283,LOC107734193,LOC107665105,LOC107589599,LOC108270052 non-coding upstream 14332 14409236 ~ 14410253 (-)
G2444 LOC108270052,LOC108428681 non-coding upstream 20475 14415379 ~ 14415673 (-)
G2445 NA non-coding upstream 23674 14418578 ~ 14419732 (-)
G2447 NA non-coding upstream 25827 14420731 ~ 14421315 (-)
G2494 NA non-coding upstream 304055 14698959 ~ 14699237 (-)
G2373 esrrg other downstream 374534 14009458 ~ 14013021 (-)
AMCG00003667 NA other downstream 655516 13664743 ~ 13732039 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other downstream 1270895 13071796 ~ 13116660 (-)
G2236 NA other downstream 1352066 13034953 ~ 13035489 (-)
AMCG00003625 NA other downstream 2309403 12075319 ~ 12078152 (-)
G2500 NA other upstream 415882 14810786 ~ 14811331 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other upstream 1120769 15515673 ~ 15591730 (-)
AMCG00003734 NA other upstream 2212506 16607410 ~ 16628401 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other upstream 2473428 16868332 ~ 16871475 (-)
AMCG00003751 NA other upstream 2742344 17137248 ~ 17140382 (-)

Expression


Co-expression Network